CATH Domain: 1ryp100 XML data for domain: 1ryp100

Molscript image for 1ryp100
1ryp100
PDB coordinates for domain 1ryp100

PDB 1ryp, Chain 1, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.60 4-Layer Sandwich
3.60.20 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1
3.60.20.10 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 Gene3D
3.60.20.10.2
3.60.20.10.2.1
3.60.20.10.2.1.1
3.60.20.10.2.1.1.1
3.60.20.10.2.1.1.1.1

Segment boundaries for domain 1ryp100

Chopping figure for domain 1ryp100
DomainStart PDB ResidueStop PDB Residue
1ryp100 -9 213

Structural Neighbourhood (14 entries)

There are 14 matching structural neighberhood comparisons for CATH ID 3.60.20.10.2.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 14 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1yarH00 88.67 Proteasome beta subunit [EC:3.4.25.1]ProteasomeProteasome subunit betaThermoplasma acidophilum 3.60.20.10 203 20 86 1.82 2.10
1rypJ00 88.61 20S proteasome subunit beta 3 [EC:3.4.25.1]Ubiquitin-dependent protein catabolic processProteasome core complex, beta-subunit complexProteasome component PUP3Saccharomyces cerevisiae 3.60.20.10 204 22 90 1.91 2.10
1rypH00 87.63 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic processResponse to stressProteasome component PRE3 3.60.20.10 205 21 90 2.39 2.63
1q5qH00 86.52 Rhodococcus erythropolisProteasome beta-type subunit 1 3.60.20.10 224 18 87 2.67 3.07
1rypK00 86.51 Proteasome core complex, beta-subunit complexNucleus20S proteasome subunit beta 4 [EC:3.4.25.1]Protein bindingResponse to stress 3.60.20.10 198 22 87 2.29 2.61
1rypI00 86.40 Proteasome core complex, beta-subunit complexUbiquitin-dependent protein catabolic process20S proteasome subunit beta 2 [EC:3.4.25.1]Proteasome storage granuleSaccharomyces cerevisiae 3.60.20.10 222 16 86 1.87 2.15
2fhh200 86.34 ProteasomeProteasome beta subunit [EC:3.4.25.1]Proteasome subunit betaMycobacterium tuberculosis 3.60.20.10 222 15 87 2.72 3.10
1rypL00 85.70 Proteasome core complex, beta-subunit complexUbiquitin-dependent protein catabolic processProteasome component PRE2Saccharomyces cerevisiaeProteasome 3.60.20.10 212 17 87 1.98 2.27
1ryp200 85.55 Proteasome core complex, beta-subunit complexProteasome storage granuleUbiquitin-dependent protein catabolic process20S proteasome subunit beta 7 [EC:3.4.25.1]Proteasome component PRE4 3.60.20.10 233 14 89 2.89 3.22
1yarA00 84.84 Proteasome subunit alphaProteasome alpha subunit [EC:3.4.25.1]ProteasomeThermoplasma acidophilum 3.60.20.10 221 17 90 4.15 4.61
1rypD00 84.52 Proteasome storage granuleProteasome core complex, alpha-subunit complexProteasome component PRE6Protein binding20S proteasome subunit alpha 4 [EC:3.4.25.1] 3.60.20.10 241 18 82 3.81 4.61
1rypG00 83.71 Proteasome storage granuleProteasome core complex, alpha-subunit complex20S proteasome subunit alpha 7 [EC:3.4.25.1]Protein bindingProteasome component C1 3.60.20.10 244 19 84 4.10 4.88
1rypF00 83.54 Ubiquitin-dependent protein catabolic processProteasome storage granule20S proteasome subunit alpha 6 [EC:3.4.25.1]Proteasome core complex, alpha-subunit complexSaccharomyces cerevisiae 3.60.20.10 233 19 87 4.33 4.95
1g3kA00 82.57 Haemophilus influenzaeATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.-]ATP-dependent protease hslV 3.60.20.10 173 13 75 2.69 3.55
Displaying entries 1 to 14 (page 1 of 1)


Domain ATOM Sequence

>pdb|1ryp100
QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN
DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY
EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD    

Domain COMBS Sequence

>pdb|1ryp100
QFNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHN
DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY
EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:31

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:53

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"