CATH Domain: 1ryoA02 XML data for domain: 1ryoA02

Molscript image for 1ryoA02
1ryoA02
PDB coordinates for domain 1ryoA02

PDB 1ryo, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.8
3.40.190.10.8.1
3.40.190.10.8.1.1
3.40.190.10.8.1.1.1
3.40.190.10.8.1.1.1.1

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Segment boundaries for domain 1ryoA02

Chopping figure for domain 1ryoA02
DomainStart PDB ResidueStop PDB Residue
1ryoA01 4 84
1ryoA01 250 311
1ryoA02 85 249

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.40.190.10.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1cb6A04 91.11 Serine-type endopeptidase activityLactotransferrinHomo sapiensHumoral immune responseStored secretory granule 3.40.190.10 160 42 87 2.06 2.36
3gzgA02 75.10 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 112 8 58 2.87 4.93
1wdnA01 74.89 ABC transportersGlutamine transport system substrate-binding proteinGlutamine-binding periplasmic proteinProtein bindingEscherichia coli K-12 3.40.190.10 96 11 54 2.57 4.71
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ryoA02
YGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADG
TDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLA
QVPSH
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ryoA02
YGSKEDPQTFYYAVAVVKKDSGFQMNQLRGKKSCHTGLGRSAGWNIPIGLLYCDLPEPRKPLEKAVANFFSGSCAPCADG
TDFPQLCQLCPGCGCSTLNQYFGYSGAFKCLKDGAGDVAFVKHSTIFENLANKADRDQYELLCLDNTRKPVDEYKDCHLA
QVPSH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"