CATH Domain: 1ryoA01 XML data for domain: 1ryoA01

Molscript image for 1ryoA01
1ryoA01
PDB coordinates for domain 1ryoA01

PDB 1ryo, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.190 D-Maltodextrin-Binding Protein; domain 2
3.40.190.10 Periplasmic binding protein-like II Gene3D
3.40.190.10.6
3.40.190.10.6.1
3.40.190.10.6.1.1
3.40.190.10.6.1.1.1
3.40.190.10.6.1.1.1.1

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Segment boundaries for domain 1ryoA01

Chopping figure for domain 1ryoA01
DomainStart PDB ResidueStop PDB Residue
1ryoA01 4 84
1ryoA01 250 311
1ryoA02 85 249

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.190.10.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1h44A01 95.03 Serine-type endopeptidase activityLactotransferrinHomo sapiensHeparin bindingHumoral immune response 3.40.190.10 141 62 97 0.99 1.01
1iejA01 93.47 Gallus gallusOvotransferrin 3.40.190.10 143 49 96 1.66 1.72
3ib0A01 91.03 LactotransferrinBos taurus 3.40.190.10 133 35 90 1.81 1.99
1cb6A01 90.50 Serine-type endopeptidase activityLactotransferrinHomo sapiensHeparin bindingStored secretory granule 3.40.190.10 180 61 77 0.96 1.23
2d3iA03 88.43 Gallus gallusOvotransferrin 3.40.190.10 179 34 73 1.57 2.15
1p99A01 80.70 ABC transportersLactococcal lipoproteinD-methionine transport system substrate-binding proteinStaphylococcus aureus subsp. aureus Mu50 3.40.190.10 144 7 86 3.55 4.12
1xs5A01 80.15 ABC transportersTreponema pallidumMembrane lipoprotein TpN32D-methionine transport system substrate-binding protein 3.40.190.10 134 9 81 3.43 4.23
3fzvD02 77.28 Probable transcriptional regulatorPseudomonas aeruginosa 3.40.190.10 109 6 69 3.27 4.72
1atgA01 76.39 Azotobacter vinelandiiBinding protein 3.40.190.10 122 5 78 3.37 4.30
3gzgA01 76.30 Molybdate transport system substrate-binding proteinMolybdate-binding periplasmic protein; permeaseABC transportersXanthomonas axonopodis pv. citri 3.40.190.10 120 11 79 3.54 4.48
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ryoA01
KTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPVVAE
FTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ryoA01
VPDKTVRWCAVSEHEATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANEADAVTLDAGLVYDAYLAPNNLKPV
VAEFTVVARSMGGKEDLIWELLNQAQEHFGKDKSKEFQLFSSPHGKDLLFKDSAHGFLKVPPRMDA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:24

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:42

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"