CATH Domain: 1ryjA00 XML data for domain: 1ryjA00

Molscript image for 1ryjA00
1ryjA00
PDB coordinates for domain 1ryjA00

PDB 1ryj, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.20 Ubiquitin-like (UB roll)
3.10.20.30 Gene3D
3.10.20.30.24
3.10.20.30.24.1
3.10.20.30.24.1.1
3.10.20.30.24.1.1.1
3.10.20.30.24.1.1.1.1

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Segment boundaries for domain 1ryjA00

Chopping figure for domain 1ryjA00
DomainStart PDB ResidueStop PDB Residue
1ryjA00 4 73

Structural Neighbourhood (33 entries)

There are 33 matching structural neighberhood comparisons for CATH ID 3.10.20.30.24.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 33 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wxmA01 83.72 Bladder cancerPathways in cancerNon-small cell lung cancerAcute myeloid leukemiaProtein binding 3.10.20.90 71 12 84 2.35 2.78
1wm3A00 83.44 Small ubiquitin-related modifierHomo sapiensSmall ubiquitin-related modifier 2Protein sumoylationProtein binding 3.10.20.90 72 11 86 2.61 3.03
1yqbA01 82.70 Ubiquilin-3Homo sapiensUbiquilin 3.10.20.90 71 18 87 2.52 2.89
2kd0A01 82.30 LRR repeats and ubiquitin-like domain-containing protein At2g30105Arabidopsis thaliana 3.10.20.90 71 12 87 2.83 3.24
1wywB00 81.98 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein bindingProtein sumoylation 3.10.20.90 79 21 87 2.79 3.19
1c1yB00 81.97 RAF proto-oncogene serine/threonine-protein kinaseNeurotrophin signaling pathwayNon-small cell lung cancerT cell receptor signaling pathwayProtein binding 3.10.20.90 77 10 81 2.54 3.10
2bwfA00 81.86 Ubiquitin domain-containing protein DSK2Protein binding, bridgingSpindle pole body duplication in nuclear envelopeSaccharomyces cerevisiaeER-associated protein catabolic process 3.10.20.90 77 12 88 3.61 4.09
3a4rA00 81.80 Mus musculusNFATC2-interacting proteinRegulation of transcription, DNA-dependentCytokine production 3.10.20.90 79 14 82 2.93 3.56
1wh3A01 81.35 CytoplasmDNA binding59 kDa 2'-5'-oligoadenylate synthase-like proteinThyroid hormone receptor bindingNucleolus 3.10.20.90 71 17 85 2.90 3.38
2zeqA00 81.33 Synaptic transmission, glutamatergicLearningAdult locomotory behaviorParkinson's diseaseDopamine metabolic process 3.10.20.90 78 12 85 2.92 3.40
1m94A00 81.06 Ubiquitin-like protein 5Protein modification processProtein bindingNuclear mRNA splicing, via spliceosomeMating projection 3.10.20.90 73 17 86 3.26 3.78
1z2mA01 80.56 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 75 7 84 2.95 3.51
1y8rC00 80.12 Nuclear poreNegative regulation of transcriptionSmall ubiquitin-related modifier 1Protein sumoylationProtein binding 3.10.20.90 84 21 83 3.87 4.64
2fazA00 79.97 E3 ubiquitin-protein ligase UHRF1RNA polymerase II transcription factor activityProtein bindingCell proliferationSequence-specific DNA binding transcription factor activity 3.10.20.90 77 17 84 3.45 4.09
1z2mA02 79.96 RIG-I-like receptor signaling pathwayInterferon-induced 17 kDa proteinISG15-protein conjugationHomo sapiensUbiquitin cross-reactive protein 3.10.20.90 77 7 87 3.62 4.16
1h4rA01 79.30 Negative regulation of cell-cell adhesionSchwann cell proliferationCytoskeletonNucleolusEarly endosome 3.10.20.90 78 5 79 2.58 3.25
2c60A01 79.12 Neurotrophin signaling pathwayMitogen-activated protein kinase kinase kinase 3MAPKKK cascadeProtein bindingPositive regulation of I-kappaB kinase/NF-kappaB cascade 3.10.20.240 77 8 80 3.56 4.42
1t0yA00 78.91 Caenorhabditis elegansTubulin-specific chaperone B 3.10.20.90 90 18 77 3.02 3.88
1p1aA00 78.89 Nucleotide excision repairUV excision repair protein RAD23 homolog BSingle-stranded DNA bindingHomo sapiensUV excision repair protein RAD23 3.10.20.90 85 15 81 3.69 4.55
1wmhB00 78.69 Partitioning defective 6 homolog alphaTranscription factor bindingViral reproductionHomo sapiens 3.10.20.240 82 7 78 3.55 4.55
2gbjB00 78.38 3.10.20.90 84 20 78 3.57 4.54
1wmhA00 77.93 Tight junctionInsulin signaling pathwayEndocytosisVesicle-mediated transportProtein binding 3.10.20.240 83 8 74 3.41 4.56
2he7A01 77.86 Tight junctionErythrocyte membrane protein band 4.1Homo sapiensBand 4.1-like protein 3Cell-cell junction 3.10.20.90 80 8 80 3.28 4.10
1wgdA00 77.55 Endoplasmic reticulum membraneHomo sapiensHomocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 proteinProtein binding 3.10.20.90 93 11 75 3.52 4.68
1rwsA00 77.38 Pyrococcus furiosusPutative uncharacterized protein 3.10.20.30 68 23 92 4.45 4.79
1v5tA00 77.18 Mus musculusUbiquitin-like domain-containing CTD phosphatase 1Protein phosphatase [EC:3.1.3.16] 3.10.20.90 90 10 77 3.80 4.89
1h8cA00 77.18 Cytoplasmic sequestering of NF-kappaBHeat shock protein bindingFAS-associated factor 1CytosolPositive regulation of protein complex assembly 3.10.20.90 82 10 81 3.92 4.80
1oeyA00 77.04 Protein C-terminus bindingNeutrophil cytosol factor 2Leukocyte transendothelial migrationCellular defense responseSuperoxide anion generation 3.10.20.90 78 5 80 3.23 4.00
2fnjB00 76.89 Renal cell carcinomaPathways in cancerUbiquitin mediated proteolysisMus musculusTranscription elongation factor B polypeptide 2 3.10.20.90 98 10 69 3.30 4.76
1ip9A00 76.37 MAPK signaling pathway - yeastMating projection tipIdentical protein bindingEstablishment of cell polarityPhosphatidylinositol-3-phosphate binding 3.10.20.240 85 12 77 3.47 4.47
1wx9A00 76.30 Large proline-rich protein BAT3Homo sapiensProtein binding 3.10.20.90 86 17 80 3.85 4.80
1wxsA00 75.59 CytoplasmUbiquitin-fold modifier 1NucleusProtein ufmylationHomo sapiens 3.10.20.90 88 15 79 3.69 4.64
1oqyA01 72.81 Nucleotide excision repairNucleotide-excision repairUV excision repair protein RAD23 homolog ASingle-stranded DNA bindingHomo sapiens 3.10.20.90 79 10 78 3.90 4.97
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Displaying entries 1 to 33 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ryjA00
MVIGMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYGG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ryjA00
MVIGMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRVIYGG
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:50

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:12

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"