CATH Domain: 1rx0C01 XML data for domain: 1rx0C01

Molscript image for 1rx0C01
1rx0C01
PDB coordinates for domain 1rx0C01

PDB 1rx0, Chain C, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.540 Butyryl-Coa Dehydrogenase, subunit A; domain 1
1.10.540.10 Butyryl-Coa Dehydrogenase, subunit A, domain 1 Gene3D
1.10.540.10.3
1.10.540.10.3.1
1.10.540.10.3.1.1
1.10.540.10.3.1.1.1
1.10.540.10.3.1.1.1.1

[top]
Segment boundaries for domain 1rx0C01

Chopping figure for domain 1rx0C01
DomainStart PDB ResidueStop PDB Residue
1rx0C01 11 133
1rx0C02 134 238
1rx0C03 239 393

Structural Neighbourhood (6 entries)

There are 6 matching structural neighberhood comparisons for CATH ID 1.10.540.10.3.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 6 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2vigA01 92.52 Fatty acid metabolismButyryl-CoA dehydrogenase [EC:1.3.99.2]Short-chain specific acyl-CoA dehydrogenase, mitochondrialValine, leucine and isoleucine degradationMetabolic pathways 1.10.540.10 116 29 93 0.97 1.04
1siqA01 90.02 Fatty acid metabolismGlutaryl-CoA dehydrogenase [EC:1.3.99.7]Glutaryl-CoA dehydrogenase activityHomo sapiensGlutaryl-CoA dehydrogenase, mitochondrial 1.10.540.10 128 19 95 1.47 1.54
1bucA01 90.02 Acyl-CoA dehydrogenase, short-chain specificMegasphaera elsdenii 1.10.540.10 123 30 96 2.70 2.79
1ukwA01 89.68 Geraniol degradationThermus thermophilus HB27[EC:1.3.99.-]Putative acyl-CoA dehydrogenase1- and 2-Methylnaphthalene degradation 1.10.540.10 116 30 94 2.61 2.77
1r2jA01 86.12 Streptomyces hygroscopicus subsp. ascomyceticusFkbI 1.10.540.10 103 20 83 1.77 2.11
2rfqB01 80.63 Rhodococcus jostii RHA13-HSA hydroxylase, oxygenase 1.10.540.10 102 14 80 2.54 3.16
[1]
Displaying entries 1 to 6 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1rx0C01
SCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSRLDTSVIFEAL
ATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKF
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1rx0C01
MVQTGHRSLTSCIDPSMGLNEEQKEFQKVAFDFAAREMAPNMAEWDQKELFPVDVMRKAAQLGFGGVYIQTDVGGSGLSR
LDTSVIFEALATGCTSTTAYISIHNMCAWMIDSFGNEEQRHKFCPPLCTMEKF
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:47

Assigning to "1.10.540.10" based on similarity with "1rx0A01" (NWSI: 100, NWO: 100, SPS: 99.36, SPO: 99, RMSD: 0.13)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1rx0C01"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1rx0C01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1rx0C01"

Insertion by auto on 09 Mar 2006 02:15

Final ChopClose added based on similarity with "1rx0A" [LEE: 0, LME: 0, MR: 1, LG: 1, SS: 98.77, SI: 100, SO: 100]