CATH Domain: 1ru4A00 XML data for domain: 1ru4A00

Molscript image for 1ru4A00
1ru4A00
PDB coordinates for domain 1ru4A00

PDB 1ru4, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.160 3 Solenoid
2.160.20 Pectate Lyase C-like
2.160.20.10 Single-stranded right-handed beta-helix, Pectin lyase-like Gene3D
2.160.20.10.8
2.160.20.10.8.1
2.160.20.10.8.1.1
2.160.20.10.8.1.1.1
2.160.20.10.8.1.1.1.1

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Segment boundaries for domain 1ru4A00

Chopping figure for domain 1ru4A00
DomainStart PDB ResidueStop PDB Residue
1ru4A00 26 425

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1ru4A00
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA
PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG
SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF
AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV
TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ru4A00
ADCSSDLTSGISTKRIYYVAPNGNSSNNGSSFNAPMSFSAAMAAVNPGELILLKPGTYTIPYTQGKGNTITFNKSGKDGA
PIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTRAGYQGAYVIGSHNTFENTAFHHNRNTGLEINNGG
SYNTVINSDAYRNYDPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAF
AGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINNTSYKNGINYGFGSNVQSGQKHYFRNNVSLSASV
TVSNADAKSNSWDTGPAASASDFVSLDTSLATVSRDNDGTLPETSLFRLSANSKLINAGTKESNISYSGSAPDLGAFERN
BLAST against CATH

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Domain History Events (5)

Classification merge by cuff on 25 Apr 2006 18:28

COMMENT: Ali - superpositions quite good, and decent SSAP scores thoughout. HMM overlap and evalues poor in some cases.SCOP suggests that 2.160.20.10 domains belong to the family pectin lyase and 2.160.20.30 to the family chondroitinase B.I would (tentively) suggest that these stay as they are ... same at T level but different at H level FINAL: Lesley - Merge, based on SCOP for this one as our scores are only marginal for an H-level match due to embellishment. Alison, SCOP has all of the domains classed in the same superfamily (pectin lyase-like). We are only interested in the H-level which equals superfamily in SCOP. family is based on 35% seq id in CATH. Not to worry about that here.

Flow stage update by cuff on 25 Apr 2006 18:28

COMMENT: Ali - superpositions quite good, and decent SSAP scores thoughout. HMM overlap and evalues poor in some cases.SCOP suggests that 2.160.20.10 domains belong to the family pectin lyase and 2.160.20.30 to the family chondroitinase B.I would (tentively) suggest that these stay as they are ... same at T level but different at H level FINAL: Lesley - Merge, based on SCOP for this one as our scores are only marginal for an H-level match due to embellishment. Alison, SCOP has all of the domains classed in the same superfamily (pectin lyase-like). We are only interested in the H-level which equals superfamily in SCOP. family is based on 35% seq id in CATH. Not to worry about that here.

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:42

Cut based on decision in database "DomChop" on "cathdb"