CATH Domain: 1rtm100 XML data for domain: 1rtm100

Molscript image for 1rtm100
1rtm100
PDB coordinates for domain 1rtm100

PDB 1rtm, Chain 1, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.17
3.10.100.10.17.1
3.10.100.10.17.1.1
3.10.100.10.17.1.1.1
3.10.100.10.17.1.1.1.1

Segment boundaries for domain 1rtm100

Chopping figure for domain 1rtm100
DomainStart PDB ResidueStop PDB Residue
1rtm100 73 221

Structural Neighbourhood (9 entries)

There are 9 matching structural neighberhood comparisons for CATH ID 3.10.100.10.17.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 9 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1kza100 90.20 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 58 77 1.19 1.54
1jznA00 86.01 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 15 83 2.28 2.74
1sl6A00 85.19 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 20 78 3.40 4.33
1byfA00 84.69 LectinPolyandrocarpa misakiensis 3.10.100.10 123 18 75 2.15 2.83
1h8uB00 84.60 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 19 72 2.04 2.81
1hq8A00 83.27 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 12 80 3.18 3.95
3bdwA00 82.17 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 13 80 3.18 3.95
1rjhA00 80.30 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 24 70 2.75 3.90
1m56D00 63.97 Rhodobacter sphaeroidesAa3-type cytochrome c oxidase subunit IV 1.20.5.160 42 7 21 0.94 4.38
Displaying entries 1 to 9 (page 1 of 1)


Domain ATOM Sequence

>pdb|1rtm100
AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK
TSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNGLWNDISCQASHTAVCEFPA    

Domain COMBS Sequence

>pdb|1rtm100
AIEVKLANMEAEINTLKSKLELTNKLHAFSMGKKSGKKFFVTNHERMPFSKVKALCSELRGTVAIPRNAEENKAIQEVAK
TSAFLGITDEVTEGQFMYVTGGRLTYSNWKKDEPNDHGSGEDCVTIVDNGLWNDISCQASHTAVCEFPA    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"