CATH Domain: 1rmdA02 XML data for domain: 1rmdA02

Molscript image for 1rmdA02
1rmdA02
PDB coordinates for domain 1rmdA02

PDB 1rmd, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.60 Classic Zinc Finger Gene3D
3.30.160.60.3
3.30.160.60.3.1
3.30.160.60.3.1.1
3.30.160.60.3.1.1.1
3.30.160.60.3.1.1.1.1

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Segment boundaries for domain 1rmdA02

Chopping figure for domain 1rmdA02
DomainStart PDB ResidueStop PDB Residue
1rmdA01 1 86
1rmdA02 87 116

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.30.160.60.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1un6D02 88.20 Xenopus laevisTranscription factor IIIA 3.30.160.60 31 16 93 2.27 2.43
1ubdC01 87.70 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 28 17 90 1.70 1.89
1tf6A02 86.61 Xenopus laevisTranscription factor IIIA 3.30.160.60 29 20 90 2.06 2.29
1tf6A04 86.54 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 16 96 2.94 3.04
1tf3A01 86.20 Xenopus laevisTranscription factor IIIA 3.30.160.60 30 23 93 2.61 2.80
1ubdC04 85.94 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 29 20 90 1.81 2.01
1ubdC02 85.10 Zinc ion bindingTranscription coactivator activityTranscriptional repressor protein YY1Transcription factor YYSequence-specific DNA binding transcription factor activity 3.30.160.60 27 18 86 2.26 2.61
2gliA01 84.96 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 33 23 87 2.26 2.57
1x5wA01 84.67 Homo sapiensZinc finger protein 64 homolog, isoforms 1 and 2 3.30.160.60 28 21 86 2.05 2.37
1meyC03 84.05 3.30.160.60 29 20 83 1.98 2.38
2drpA01 83.44 Brain morphogenesisDorsal appendage formationChromatin bindingDrosophila melanogasterPeripheral nervous system development 3.30.160.60 34 10 79 1.95 2.46
2adrA01 83.43 NucleusRegulation of carbohydrate metabolic processPeroxisome organizationNegative regulation of transcription from RNA polymerase II promoter by glucoseRegulatory protein ADR1 3.30.160.60 29 24 93 2.51 2.69
2drpA02 82.79 Brain morphogenesisChromatin bindingDorsal appendage formationDrosophila melanogasterPeripheral nervous system development 3.30.160.60 29 20 86 2.01 2.32
1tf6D01 82.67 Xenopus laevisTranscription factor IIIA 3.30.160.60 33 20 84 2.37 2.79
1bboA02 82.01 DNA bindingZinc finger protein 40NucleusHomo sapiensHuman immunodeficiency virus type I enhancer-binding protein 3.30.160.60 31 23 90 3.09 3.42
1tf6A03 81.44 Xenopus laevisTranscription factor IIIA 3.30.160.60 34 13 88 2.62 2.97
1kyqA02 78.61 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.30.160.110 37 0 72 2.30 3.15
2gliA04 77.80 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 16 93 3.07 3.28
1ncsA00 77.70 Regulation of transcription involved in G1 phase of mitotic cell cycleNucleusProtein bindingTranscriptional factor SWI5Cytoplasm 3.30.160.60 47 16 63 2.02 3.16
2r1fA03 76.95 Escherichia coli K-12UPF0755 protein yceG 3.30.160.60 39 13 76 3.12 4.06
1yuiA00 75.03 Drosophila melanogasterPositive regulation of transcription, DNA-dependentTranscription factor GAGACentromeric heterochromatinProtein heterodimerization activity 3.30.160.60 54 16 51 2.57 4.96
1bbgA00 72.95 Pollen allergen Amb t 5Ambrosia trifida 3.30.160.80 40 3 62 2.36 3.78
3bidA01 71.96 Neisseria meningitidis serogroup BUPF0339 protein NMB1088 3.30.160.160 46 13 63 2.45 3.89
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Displaying entries 1 to 23 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rmdA02
LMVKCPAQDCNEEVSLEKYNHHVSSHKESK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rmdA02
LMVKCPAQDCNEEVSLEKYNHHVSSHKESK
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1rmd002" to "1rmdA02" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:41

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"