CATH Domain: 1rmdA01 XML data for domain: 1rmdA01

Molscript image for 1rmdA01
1rmdA01
PDB coordinates for domain 1rmdA01

PDB 1rmd, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.40 Herpes Virus-1
3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger) Gene3D
3.30.40.10.5
3.30.40.10.5.1
3.30.40.10.5.1.1
3.30.40.10.5.1.1.1
3.30.40.10.5.1.1.1.1

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Segment boundaries for domain 1rmdA01

Chopping figure for domain 1rmdA01
DomainStart PDB ResidueStop PDB Residue
1rmdA01 1 86
1rmdA02 87 116

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 3.30.40.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1t1hA00 80.16 Arabidopsis thalianaU-box domain-containing protein 14Ubiquitin-protein ligase activity 3.30.40.10 78 16 81 3.03 3.72
1iymA00 78.34 Oryza sativa Japonica GroupE3 ubiquitin-protein ligase EL5 3.30.40.10 55 23 59 2.86 4.82
1g25A00 75.47 CDK-activating kinase assembly factor MAT1Positive regulation of transcription from RNA polymerase II promoterZinc ion bindingProtein N-terminus bindingNucleotide excision repair 3.30.40.10 65 15 69 3.34 4.79
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rmdA01
NCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSF
LNILNS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rmdA01
NCSKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSF
LNILNS
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1rmd001" to "1rmdA01" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:58

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:41

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"