CATH Domain: 1rlmA01 XML data for domain: 1rlmA01

Molscript image for 1rlmA01
1rlmA01
PDB coordinates for domain 1rlmA01

PDB 1rlm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1000 Gene3D
3.40.50.1000.18
3.40.50.1000.18.1
3.40.50.1000.18.1.1
3.40.50.1000.18.1.1.1
3.40.50.1000.18.1.1.1.1

Segment boundaries for domain 1rlmA01

Chopping figure for domain 1rlmA01
DomainStart PDB ResidueStop PDB Residue
1rlmA01 2 82
1rlmA01 190 270
1rlmA02 83 189

Structural Neighbourhood (23 entries)

There are 23 matching structural neighberhood comparisons for CATH ID 3.40.50.1000.18.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 23 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nf2A01 90.64 Thermotoga maritimaPutative uncharacterized protein 3.40.50.1000 161 26 97 3.01 3.09
3dnpA01 84.58 Stress response protein yhaXBacillus subtilis 3.40.50.1000 144 22 88 3.07 3.48
1u02A01 84.16 Trehalose-6-phosphate phosphatase related proteinThermoplasma acidophilum 3.40.50.1000 149 13 85 3.36 3.94
1wpgA04 82.92 Calcium ion bindingATP catabolic processER-Golgi intermediate compartmentCalcium-transporting ATPase activitySarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.40.50.1000 156 18 77 3.09 3.97
2hszA01 81.46 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 3.40.50.1000 148 15 84 2.85 3.37
2nyvA01 81.36 Phosphoglycolate phosphatase [EC:3.1.3.18]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysAquifex aeolicusPhosphoglycolate phosphatase 3.40.50.1000 151 15 88 3.57 4.02
3gygC01 81.07 Bacillus subtilisNTD biosynthesis operon putative hydrolase ntdB 3.40.50.1000 191 17 79 2.93 3.71
3b8cA03 80.64 Oxidative phosphorylationArabidopsis thalianaPlasma membraneATPase 2, plasma membrane-typeProtein binding 3.40.50.1000 163 17 82 2.62 3.19
1xviB01 80.61 Fructose and mannose metabolismMannosyl-3-phosphoglycerate phosphatase [EC:3.1.3.70]Putative mannosyl-3-phosphoglycerate phosphataseProtein bindingEscherichia coli K-12 3.40.50.1000 135 16 73 3.33 4.53
3d6jA01 79.71 Phosphoglycolate phosphatase [EC:3.1.3.18]Putative haloacid dehalogenase-like hydrolaseBacteroides fragilis NCTC 9343Glyoxylate and dicarboxylate metabolismMetabolic pathways 3.40.50.1000 137 18 80 3.06 3.78
2ah5A01 79.61 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 142 14 83 3.30 3.96
1te2A01 79.61 Fructose and mannose metabolismMetabolic pathwaysRiboflavin metabolismThiamine metabolismMetal ion binding 3.40.50.1000 141 14 80 3.43 4.24
2hdoA01 79.43 Phosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus plantarumMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase (Putative) 3.40.50.1000 134 15 80 3.41 4.22
2pkeA01 78.83 Xanthomonas campestris pv. campestrisPutative hydrolase of the HAD superfamilyHydrolase, haloacid delahogenase-like family 3.40.50.1000 152 11 81 3.82 4.69
1zjjB01 78.77 4-nitrophenyl phosphatase [EC:3.1.3.41]Pyrococcus horikoshiiGamma-Hexachlorocyclohexane degradationPutative uncharacterized protein PH1952 3.40.50.1000 146 11 81 3.46 4.25
2fi1A01 78.74 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 123 15 71 3.04 4.25
3ed5A01 78.56 Putative HAD-hydrolase yfnBBacillus subtilis2-haloacid dehalogenase [EC:3.8.1.2]1,2-Dichloroethane degradationGamma-Hexachlorocyclohexane degradation 3.40.50.1000 140 10 81 3.60 4.42
1swvA01 78.35 Bacillus cereusPhosphonoacetaldehyde hydrolase 3.40.50.1000 178 8 79 3.37 4.25
2b0cA01 77.22 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 14 77 3.31 4.26
2hx1A01 77.05 Cytophaga hutchinsonii ATCC 33406Possible sugar phosphatase, HAD superfamily 3.40.50.1000 155 10 75 3.32 4.37
2p11A01 76.32 Burkholderia xenovorans LB400Putative uncharacterized protein 3.40.50.1000 140 11 75 3.55 4.68
1cqzA01 75.94 PeroxisomeMus musculusSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase 2 3.40.50.1000 162 12 75 3.44 4.53
1rkuA01 75.79 Glycine, serine and threonine metabolismMetabolic pathwaysPhosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]Pseudomonas aeruginosaHomoserine kinase 3.40.50.1000 111 18 64 2.97 4.58
Displaying entries 1 to 23 (page 1 of 1)


Domain ATOM Sequence

>pdb|1rlmA01
AVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFH
GLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTYP
FN    

Domain COMBS Sequence

>pdb|1rlmA01
MAVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDEISFVAENGALVYEHGKQLF
HGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTY
PFNS    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:40

Cut based on decision in database "DomChop" on "cathdb"