CATH Domain: 1rliD00 XML data for domain: 1rliD00

Molscript image for 1rliD00
1rliD00
PDB coordinates for domain 1rliD00

PDB 1rli, Chain D, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.360 Gene3D
3.40.50.360.8
3.40.50.360.8.1
3.40.50.360.8.1.1
3.40.50.360.8.1.1.1
3.40.50.360.8.1.1.1.1

[top]
Segment boundaries for domain 1rliD00

Chopping figure for domain 1rliD00
DomainStart PDB ResidueStop PDB Residue
1rliD00 2 177

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.40.50.360.8.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3d7nA00 84.23 Agrobacterium tumefaciens str. C58Flavodoxin, WrbA-like protein 3.40.50.360 153 16 82 2.45 2.98
3gfsC00 84.20 Bacillus subtilisFMN-dependent NADPH-azoreductase 3.40.50.360 169 17 86 3.17 3.67
1e5dA01 82.89 Desulfovibrio gigasRubredoxin-oxygen oxidoreductase 3.40.50.360 143 10 78 2.54 3.23
2ohhA02 82.58 Type A flavoprotein fprAMethanothermobacter marburgensis str. Marburg 3.40.50.360 144 13 80 2.72 3.38
2arkA00 79.55 FlavodoxinAquifex aeolicus 3.40.50.360 180 16 71 2.85 3.98
5nulA00 79.23 Clostridium beijerinckiiFlavodoxin 3.40.50.360 138 15 76 3.14 4.09
1vmeA02 78.61 Thermotoga maritimaPutative uncharacterized protein 3.40.50.360 144 13 76 3.33 4.37
1sqsA00 78.22 Streptococcus pneumoniaePutative uncharacterized protein 3.40.50.360 228 15 62 2.89 4.64
1sg0A00 77.68 Ribosyldihydronicotinamide dehydrogenase [quinone]Homo sapiensNADPH dehydrogenase (quinone) activityElectron carrier activity 3.40.50.360 230 14 65 3.09 4.74
1bvyF00 77.21 Bacillus megateriumBifunctional P-450/NADPH-P450 reductase 3.40.50.360 152 11 81 4.04 4.95
[1]
Displaying entries 1 to 10 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1rliD00
KIAVINGGTRSGGNTDVLAEKAVQGFDAEHIYLQKYPIAQGGFRPVQDDYDSIIERILQCHILIFATPIYWFGMSGTLKL
FIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGYVLGEGNRPGDILRDHQALS
AASRLLKR
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1rliD00
SNAMKIAVINGGTRSGGNTDVLAEKAVQGFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATP
IYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKGYVLGEGNR
PGDILRDHQALSAASRLLKRSDAI
BLAST against CATH

[top]
Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:42

Assigning to "3.40.50.360" based on similarity with "1rliC00" (NWSI: 100, NWO: 100, SPS: 97.85, SPO: 98, RMSD: 0.27)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1rliD00"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1rliD00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1rliD00"

Insertion by auto on 09 Mar 2006 01:29

Final ChopClose added based on similarity with "1rliA" [LEE: 0, LME: 0, MR: 3, LG: 15, SS: 95.08, SI: 100, SO: 100]