CATH Domain: 1rl0A02 XML data for domain: 1rl0A02

Molscript image for 1rl0A02
1rl0A02
PDB coordinates for domain 1rl0A02

PDB 1rl0, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
4 Few Secondary Structures
4.10 Irregular
4.10.470 Ricin (A Subunit), domain 2
4.10.470.10 Ricin (A Subunit), domain 2 Gene3D
4.10.470.10.7
4.10.470.10.7.1
4.10.470.10.7.1.1
4.10.470.10.7.1.1.1
4.10.470.10.7.1.1.1.1

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Segment boundaries for domain 1rl0A02

Chopping figure for domain 1rl0A02
DomainStart PDB ResidueStop PDB Residue
1rl0A01 1 181
1rl0A02 182 255

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 4.10.470.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1m2tA02 85.95 Beta-galactoside-specific lectin 1Viscum album 4.10.470.10 81 14 86 2.28 2.64
1abrA02 84.64 RRNA N-glycosylase activityAbrus precatoriusAbrin-aGalactose bindingNegative regulation of translation 4.10.470.10 85 17 85 2.83 3.30
1hwmA02 83.20 Sambucus ebulusRibosome-inactivating protein 4.10.470.10 86 16 83 2.35 2.81
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rl0A02
RYIQNLVTKNFPNKFDSENKVIQFQVSWSKISTAIFGDCKNGVFNKDYDFGFGKVRQAKDLQMGLLKYLGRPKS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rl0A02
RYIQNLVTKNFPNKFDSENKVIQFQVSWSKISTAIFGDCKNGVFNKDYDFGFGKVRQAKDLQMGLLKYLGRPKS
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:42

Assigning to "4.10.470.10" based on similarity with "1lp8A02" (NWSI: 100, NWO: 98.6486486486486, SPS: 98.84, SPO: 98, RMSD: 0.28)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1rl0A02"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1rl0A02"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1rl0A02"

Insertion by auto on 09 Mar 2006 01:29

Final ChopClose added based on similarity with "1lp8A" [LEE: 1, LME: 0, MR: 0, LG: 1, SS: 98.43, SI: 99.6062992125984, SO: 99.6078431372549]