CATH Domain: 1rkqA01 XML data for domain: 1rkqA01

Molscript image for 1rkqA01
1rkqA01
PDB coordinates for domain 1rkqA01

PDB 1rkq, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1000 Gene3D
3.40.50.1000.2
3.40.50.1000.2.1
3.40.50.1000.2.1.1
3.40.50.1000.2.1.1.1
3.40.50.1000.2.1.1.1.1

Segment boundaries for domain 1rkqA01

Chopping figure for domain 1rkqA01
DomainStart PDB ResidueStop PDB Residue
1rkqA01 1 87
1rkqA01 195 271
1rkqA02 88 194

Structural Neighbourhood (41 entries)

There are 41 matching structural neighberhood comparisons for CATH ID 3.40.50.1000.2.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 41 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nf2A01 91.67 Thermotoga maritimaPutative uncharacterized protein 3.40.50.1000 161 32 96 1.84 1.91
1rlmA01 91.37 Sugar phosphatase supHSugar-phosphatase [EC:3.1.3.23]Escherichia coli K-12 3.40.50.1000 162 28 95 1.65 1.73
1wr8A01 90.23 Pyrococcus horikoshiiPhosphoglycolate phosphatase 3.40.50.1000 161 29 95 1.96 2.05
3dnpA01 89.93 Stress response protein yhaXBacillus subtilis 3.40.50.1000 144 36 85 1.63 1.90
1l6rA01 88.02 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.40.50.1000 155 23 94 2.34 2.48
1k1eD00 87.04 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (KDO 8-P phosphatase) [EC:3.1.3.45]Haemophilus influenzaeLipopolysaccharide biosynthesisMetabolic pathways 3.40.50.1000 170 16 84 1.93 2.29
1s2oA01 84.89 Synechocystis sp. PCC 6803Slr0953 protein 3.40.50.1000 173 22 90 3.17 3.49
1wpgA04 84.74 Calcium ion bindingATP catabolic processER-Golgi intermediate compartmentCalcium-transporting ATPase activitySarcoplasmic/endoplasmic reticulum calcium ATPase 1 3.40.50.1000 156 16 78 2.45 3.11
1u02A01 84.50 Trehalose-6-phosphate phosphatase related proteinThermoplasma acidophilum 3.40.50.1000 149 22 84 2.57 3.03
3gygC01 82.79 Bacillus subtilisNTD biosynthesis operon putative hydrolase ntdB 3.40.50.1000 191 15 81 3.71 4.54
1nnlA01 82.79 Phosphoserine phosphatase [EC:3.1.3.3]Phosphoserine phosphataseGlycine, serine and threonine metabolismHomo sapiensPhosphoserine phosphatase activity 3.40.50.1000 154 16 83 3.06 3.66
2hszA01 82.19 Phosphoglycolate phosphatase [EC:3.1.3.18]Haemophilus somnus 129PTMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase 3.40.50.1000 148 22 84 2.50 2.97
2nyvA01 81.53 Phosphoglycolate phosphatase [EC:3.1.3.18]Glyoxylate and dicarboxylate metabolismMetabolic pathwaysAquifex aeolicusPhosphoglycolate phosphatase 3.40.50.1000 151 15 87 3.45 3.93
2ah5A01 81.02 Glyoxylate and dicarboxylate metabolismMetabolic pathwaysPhosphoglycolate phosphatase [EC:3.1.3.18]Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 142 14 84 3.28 3.90
3b8cA03 80.98 Oxidative phosphorylationArabidopsis thalianaPlasma membraneATPase 2, plasma membrane-typeProtein binding 3.40.50.1000 163 19 83 2.35 2.81
2hi0A01 80.52 Putative phosphoglycolate phosphatasePhosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842Metabolic pathwaysGlyoxylate and dicarboxylate metabolism 3.40.50.1000 146 20 86 3.32 3.83
2ho4B01 80.07 Mus musculusHaloacid dehalogenase-like hydrolase domain-containing protein 2 3.40.50.1000 159 18 85 3.56 4.14
1qq5A01 79.98 (S)-2-haloacid dehalogenaseXanthobacter autotrophicus 3.40.50.1000 166 12 83 3.49 4.17
3d6jA01 79.95 Phosphoglycolate phosphatase [EC:3.1.3.18]Putative haloacid dehalogenase-like hydrolaseBacteroides fragilis NCTC 9343Glyoxylate and dicarboxylate metabolismMetabolic pathways 3.40.50.1000 137 14 82 3.11 3.78
2b0cA01 79.85 Phosphatase yihXGlucose-1-phosphatase activityPutative hydrolase of the HAD superfamilyEscherichia coli K-12 3.40.50.1000 133 12 75 2.92 3.86
2pkeA01 79.69 Xanthomonas campestris pv. campestrisPutative hydrolase of the HAD superfamilyHydrolase, haloacid delahogenase-like family 3.40.50.1000 152 17 80 3.77 4.68
1swvA01 79.65 Bacillus cereusPhosphonoacetaldehyde hydrolase 3.40.50.1000 178 15 78 2.99 3.83
2fdrA01 79.54 Agrobacterium tumefaciens str. C58Putative uncharacterized protein 3.40.50.1000 150 14 84 3.14 3.73
2hcfA01 79.53 Chlorobaculum tepidumHydrolase, haloacid dehalogenase-like family 3.40.50.1000 156 21 87 3.83 4.39
3i28A01 79.17 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 16 72 2.76 3.80
2pr7A00 79.15 Corynebacterium glutamicumHaloacid dehalogenase/epoxide hydrolase family 3.40.50.1000 131 19 74 3.05 4.10
2fi1A01 79.02 Hydrolase, haloacid dehalogenase-like familyStreptococcus pneumoniae 3.40.50.1000 123 16 71 2.77 3.88
2oycA01 78.92 Vitamin B6 metabolismPyridoxal phosphate phosphataseHomo sapiensPyridoxal phosphatase [EC:3.1.3.74]Metabolic pathways 3.40.50.1000 167 10 79 3.19 4.04
2hdoA01 78.87 Phosphoglycolate phosphatase [EC:3.1.3.18]Lactobacillus plantarumMetabolic pathwaysGlyoxylate and dicarboxylate metabolismPhosphoglycolate phosphatase (Putative) 3.40.50.1000 134 11 79 3.65 4.60
1zjjB01 78.86 4-nitrophenyl phosphatase [EC:3.1.3.41]Pyrococcus horikoshiiGamma-Hexachlorocyclohexane degradationPutative uncharacterized protein PH1952 3.40.50.1000 146 18 79 3.18 4.01
1te2A01 78.81 Fructose and mannose metabolismMetabolic pathwaysRiboflavin metabolismThiamine metabolismMetal ion binding 3.40.50.1000 141 21 82 3.20 3.86
3ed5A01 78.80 Putative HAD-hydrolase yfnBBacillus subtilis2-haloacid dehalogenase [EC:3.8.1.2]1,2-Dichloroethane degradationGamma-Hexachlorocyclohexane degradation 3.40.50.1000 140 9 81 3.17 3.88
1u7pD00 78.75 Mus musculusMagnesium-dependent phosphatase 1 3.40.50.1000 161 11 76 3.00 3.94
1cqzA01 78.42 PeroxisomeMus musculusSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase 2 3.40.50.1000 162 14 75 3.64 4.81
2wf7A01 78.10 Starch and sucrose metabolismLactococcus lactis subsp. lactisBeta-phosphoglucomutaseBeta-phosphoglucomutase [EC:5.4.2.6] 3.40.50.1000 140 14 81 3.21 3.96
2p11A01 77.75 Burkholderia xenovorans LB400Putative uncharacterized protein 3.40.50.1000 140 13 73 3.43 4.65
2hx1A01 77.54 Cytophaga hutchinsonii ATCC 33406Possible sugar phosphatase, HAD superfamily 3.40.50.1000 155 12 77 3.58 4.62
1rkuA01 77.14 Glycine, serine and threonine metabolismMetabolic pathwaysPhosphoserine / homoserine phosphotransferase [EC:3.1.3.3 2.7.1.39]Pseudomonas aeruginosaHomoserine kinase 3.40.50.1000 111 18 63 2.63 4.15
3dv9A01 76.99 Bacteroides vulgatus ATCC 8482Putative beta-phosphoglucomutase 3.40.50.1000 160 13 82 3.51 4.26
2qltA01 76.37 Response to osmotic stressNucleusProtein bindingMetabolic pathwaysCytoplasm 3.40.50.1000 171 11 80 3.87 4.80
3bwvA01 76.05 Putative 5'(3')-deoxyribonucleotidaseStaphylococcus epidermidis ATCC 12228 3.40.50.1000 121 12 71 3.38 4.70
Displaying entries 1 to 41 (page 1 of 1)


Domain ATOM Sequence

>pdb|1rkqA01
SLAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAAD
GSTVAQTRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIEK
YVLN    

Domain COMBS Sequence

>pdb|1rkqA01
MSLAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAA
DGSTVAQTRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPSVKEVANFVTKSNLEDGVAFAIE
KYVLNEGGSHHHHHH    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:40

Cut based on decision in database "DomChop" on "cathdb"