CATH Domain: 1rk8A00 XML data for domain: 1rk8A00

Molscript image for 1rk8A00
1rk8A00
PDB coordinates for domain 1rk8A00

PDB 1rk8, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.9
3.30.70.330.9.1
3.30.70.330.9.1.1
3.30.70.330.9.1.1.1
3.30.70.330.9.1.1.1.1

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Segment boundaries for domain 1rk8A00

Chopping figure for domain 1rk8A00
DomainStart PDB ResidueStop PDB Residue
1rk8A00 66 153

Structural Neighbourhood (43 entries)

There are 43 matching structural neighberhood comparisons for CATH ID 3.30.70.330.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 43 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1hl6C00 91.54 SpliceosomeRNA-binding protein 8AMicrotubule cytoskeleton organizationNucleusDrosophila melanogaster 3.30.70.330 111 93 72 0.40 0.55
1cvjA01 91.02 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 29 88 1.23 1.39
1h2vZ00 90.83 SpliceosomeMRNA cappingMRNA cap binding complexNuclear-transcribed mRNA catabolic process, nonsense-mediated decayNuclear cap-binding protein subunit 2 3.30.70.330 92 26 94 3.46 3.66
2qfjA02 90.51 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 27 93 2.49 2.67
1cvjG02 90.51 Poly(A) RNA bindingProtein C-terminus bindingTranslation activator activityMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 88 21 94 2.48 2.63
2do0A01 90.47 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 21 87 1.61 1.84
1x5uA01 90.40 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 26 91 1.88 2.04
1fxlA02 90.40 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 24 86 1.37 1.59
1oiaA00 90.07 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 12 91 3.19 3.50
1x5oA01 89.18 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 15 89 1.73 1.93
3feyB00 88.76 SpliceosomeMRNA cappingMRNA cap binding complexNuclear cap-binding protein subunit 2Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 3.30.70.330 97 26 85 3.36 3.93
1fxlA01 88.76 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 71 33 81 1.53 1.87
2pehA01 88.19 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 15 89 3.54 3.95
1d8zA00 88.01 Mus musculusAU-rich element bindingELAV like protein 2/3/4ELAV-like protein 3 3.30.70.330 89 27 95 2.94 3.08
2dgsA01 87.87 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 19 95 3.80 3.98
2errA01 87.18 Fox-1 homolog AProtein C-terminus bindingHomo sapiensTrans-Golgi network 3.30.70.330 83 24 94 3.05 3.24
1no8A00 86.44 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 25 89 2.44 2.72
1sjqA00 86.30 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 88 14 88 2.98 3.36
2u2fA00 86.18 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 85 27 94 2.83 3.00
1uw4A00 86.15 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 6 91 3.74 4.10
1fjeB02 85.99 NucleolinMesocricetus auratus 3.30.70.330 84 26 94 3.10 3.29
2jwnA01 85.41 CytoplasmPoly(A) RNA bindingXenopus laevisEmbryonic polyadenylate-binding protein 2-B 3.30.70.330 100 20 82 3.04 3.71
1jmtA00 84.48 Spliceosomal complexSplicing factor U2AF 35 kDa subunitCajal bodyHomo sapiensProtein binding 3.30.70.330 98 14 79 2.48 3.12
1ufwA00 84.38 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 17 81 2.85 3.52
1sjrA00 83.97 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 108 19 75 3.38 4.51
1fjeB01 83.46 NucleolinMesocricetus auratus 3.30.70.330 81 16 87 2.96 3.39
2u1aA00 83.08 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 88 24 90 3.73 4.10
3sxlA02 82.93 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 27 63 1.89 2.99
2nzcA00 80.61 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 12 87 4.23 4.84
1in0A01 79.86 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 14 80 2.87 3.57
1qm9A01 79.24 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 19 80 3.39 4.21
2rhsD06 79.13 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 9 79 3.95 4.97
1vq8S00 78.57 Large subunit ribosomal protein L23Ribosome50S ribosomal protein L23PHaloarcula marismortui 3.30.70.330 81 7 71 3.46 4.86
1eayD00 78.55 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 8 75 2.84 3.74
1mw7A03 78.47 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 5 80 3.75 4.66
2pd1A01 78.32 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 5 84 3.99 4.70
2fb0A00 78.26 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 8 86 4.34 5.00
1wj9A01 77.44 Thermus thermophilus HB8Putative uncharacterized protein TTHB192 3.30.70.1200 87 12 79 3.72 4.69
2hiyB01 76.95 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 6 78 3.35 4.29
1s99A01 76.39 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 2 79 3.82 4.82
2od4B01 76.18 3.30.70.900 81 7 82 4.02 4.86
1usmA00 75.77 Transcriptional coactivatorThermus thermophilus 3.30.1360.20 77 6 71 3.15 4.42
1i1gA02 74.96 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 9 80 3.95 4.91
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Displaying entries 1 to 43 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rk8A00
PQRSVGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQV
DWCFVKG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rk8A00
PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ
VDWCFVKGPKRVKKSEKRRR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"