CATH Domain: 1rk6A02 XML data for domain: 1rk6A02

Molscript image for 1rk6A02
1rk6A02
PDB coordinates for domain 1rk6A02

PDB 1rk6, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.140 Metal-dependent hydrolases Gene3D
3.20.20.140.5
3.20.20.140.5.1
3.20.20.140.5.1.1
3.20.20.140.5.1.1.1
3.20.20.140.5.1.1.1.1

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Segment boundaries for domain 1rk6A02

Chopping figure for domain 1rk6A02
DomainStart PDB ResidueStop PDB Residue
1rk6A01 7 60
1rk6A01 420 433
1rk6A01 452 470
1rk6A02 61 287
1rk6A02 345 414
1rk6A03 288 344

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 3.20.20.140.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gkrB02 78.34 L-hydantoinaseArthrobacter aurescens 3.20.20.140 320 16 76 3.22 4.22
1onwB02 75.85 Isoaspartyl dipeptidaseBeta-aspartyl-dipeptidase (metallo-type) [EC:3.4.19.-]Escherichia coli K-12 3.20.20.140 269 13 81 4.03 4.97
1p1mA02 75.29 Thermotoga maritima5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.- 3.5.4.28]5-methylthioadenosine/S-adenosylhomocysteine deaminase 3.20.20.140 281 10 75 3.50 4.62
2qt3A02 75.17 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 3.20.20.140 301 11 84 4.17 4.96
3cjpA00 75.16 Predicted amidohodrolase (Dihydroorotase family)Clostridium acetobutylicum 3.20.20.140 260 11 77 3.71 4.79
3feqC02 75.14 3.20.20.140 299 12 73 3.54 4.81
1bf6A00 74.99 Phosphotriesterase homology proteinProtein bindingEscherichia coli K-12 3.20.20.140 291 9 82 3.73 4.50
2imrA02 73.25 Uncharacterized protein DR_0824Deinococcus radiodurans 3.20.20.140 309 9 75 3.72 4.93
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rk6A02
PGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAV
NAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATH
MRDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAFMMDEPDVQRILA
FGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFG
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rk6A02
PGFIDSHTHDDNYLLKHRDMTPKISQGVTTVVTGNCGISLAPLAHANPPAPLDLLDEGGSFRFARFSDYLEALRAAPPAV
NAACMVGHSTLRAAVMPDLRREATADEIQAMQALADDALASGAIGISTGAFYPPAAHASTEEIIEVCRPLITHGGVYATH
MRDEGEHIVQALEETFRIGRELDVPVVISHHKVMGKLNFGRSKETLALIEAAMASQDVSLDAYPYVAFMMDEPDVQRILA
FGPTMIGSDGLPHDERPHPRLWGTFPRVLGHYSRDLGLFPLETAVWKMTGLTAAKFG
BLAST against CATH

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Domain History Events (2)

Domain assigned by lewis on 09 Aug 2006 17:12

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the domain is being reassigned back to its original superfamily. This work is done under ticket:98.

Insertion by lewis on 09 Aug 2006 17:12

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the chopping is being reinserted but with the segments reordered in the domains. The domains should not be reordered. This work is done under ticket:98.