CATH Domain: 1rk6A01 XML data for domain: 1rk6A01

Molscript image for 1rk6A01
1rk6A01
PDB coordinates for domain 1rk6A01

PDB 1rk6, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.7
2.30.40.10.7.1
2.30.40.10.7.1.1
2.30.40.10.7.1.1.1
2.30.40.10.7.1.1.1.1

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Segment boundaries for domain 1rk6A01

Chopping figure for domain 1rk6A01
DomainStart PDB ResidueStop PDB Residue
1rk6A01 7 60
1rk6A01 420 433
1rk6A01 452 470
1rk6A02 61 287
1rk6A02 345 414
1rk6A03 288 344

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 2.30.40.10.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gkrA01 90.21 L-hydantoinaseArthrobacter aurescens 2.30.40.10 87 28 96 1.56 1.62
2vhlB01 89.87 Amino sugar and nucleotide sugar metabolismN-acetylglucosamine-6-phosphate deacetylaseBacillus subtilisN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 17 93 2.73 2.92
2gwnA01 89.84 Pyrimidine metabolismDihydroorotaseDihydroorotase [EC:3.5.2.3]Porphyromonas gingivalisMetabolic pathways 2.30.40.10 96 22 87 2.24 2.56
1yrrA01 88.53 Amino sugar and nucleotide sugar metabolismEscherichia coli O157:H7N-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 20 85 1.78 2.07
1gkpA01 88.47 HydrolaseThermus sp. 2.30.40.10 81 29 89 1.95 2.17
2qt3A01 87.56 N-isopropylammelide isopropyl amidohydrolasePseudomonas sp. ADP 2.30.40.10 100 27 83 1.73 2.08
1o12A01 87.08 Amino sugar and nucleotide sugar metabolismThermotoga maritimaN-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 72 20 79 3.49 4.40
2qs8A01 86.91 2.30.40.10 99 18 81 2.04 2.49
3feqA01 86.84 2.30.40.10 105 31 78 1.67 2.14
3be7A01 86.21 2.30.40.10 95 18 84 2.09 2.48
2icsA01 85.68 Pyrimidine metabolismDihydroorotase [EC:3.5.2.3]Metabolic pathwaysEnterococcus faecalisPutative uncharacterized protein 2.30.40.10 100 21 76 1.73 2.28
2pajA01 84.43 2.30.40.10 119 21 70 1.96 2.78
1kcxA01 83.15 Mus musculusDendriteDihydropyrimidinase-related protein 1Neuronal cell body 2.30.40.10 103 18 69 1.99 2.85
1gkrB01 82.85 L-hydantoinaseArthrobacter aurescens 2.30.40.10 130 31 65 1.40 2.14
2ogjA01 80.56 Pyrimidine metabolismAgrobacterium tumefaciens str. C58Dihydroorotase [EC:3.5.2.3]Metabolic pathwaysPutative uncharacterized protein 2.30.40.10 115 21 74 3.40 4.55
2imrA01 80.09 Uncharacterized protein DR_0824Deinococcus radiodurans 2.30.40.10 69 14 73 2.63 3.58
2oodA01 78.04 Bradyrhizobium japonicumGuanine deaminase [EC:3.5.4.3]Purine metabolismBlr3880 proteinMetabolic pathways 2.30.40.10 135 18 60 2.60 4.28
1ejxC01 76.40 Arginine and proline metabolismKlebsiella aerogenesPurine metabolismUrease alpha subunit [EC:3.5.1.5]Atrazine degradation 2.30.40.10 185 26 45 1.68 3.66
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Displaying entries 1 to 18 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rk6A01
PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRIDVAGKVVSQVQPGYYADLVVFDGIHSVYVNGAAV
WEDQSFT
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rk6A01
PFDYILSGGTVIDGTNAPGRLADVGVRGDRIAAVGDLSASSARRRIDVAGKVVSQVQPGYYADLVVFDGIHSVYVNGAAV
WEDQSFT
BLAST against CATH

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Domain History Events (2)

Domain assigned by lewis on 09 Aug 2006 17:12

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the domain is being reassigned back to its original superfamily. This work is done under ticket:98.

Insertion by lewis on 09 Aug 2006 17:12

Automatically fixing a bunch of choppings that have domains with misordered segments. Here the chopping is being reinserted but with the segments reordered in the domains. The domains should not be reordered. This work is done under ticket:98.