CATH Domain: 1rj8A00 XML data for domain: 1rj8A00

Molscript image for 1rj8A00
1rj8A00
PDB coordinates for domain 1rj8A00

PDB 1rj8, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.120 Jelly Rolls
2.60.120.40 Gene3D
2.60.120.40.8
2.60.120.40.8.1
2.60.120.40.8.1.1
2.60.120.40.8.1.1.1
2.60.120.40.8.1.1.1.1

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Segment boundaries for domain 1rj8A00

Chopping figure for domain 1rj8A00
DomainStart PDB ResidueStop PDB Residue
1rj8A00 248 389

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.60.120.40.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1tnrA00 85.95 Lymphotoxin-alphaType I diabetes mellitusSignal transductionLymphotoxin alpha (TNF superfamily, member 1)Induction of apoptosis 2.60.120.40 144 21 85 2.20 2.58
1s55A00 85.08 Mammary gland epithelial cell proliferationOssificationOrgan morphogenesisLymph node developmentProtein homooligomerization 2.60.120.40 156 16 85 2.44 2.86
1pgsA01 73.73 Elizabethkingia miricolaPeptide-N(4)-(N-acetyl-beta-D-glucosaminyl)asparagine amidase F 2.60.120.230 135 5 78 3.69 4.70
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rj8A00
PAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVYYINFTDFASYEVVVDEKPF
LQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rj8A00
PAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVYYINFTDFASYEVVVDEKPF
LQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:45

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:04

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"