CATH Domain: 1ri6A00 XML data for domain: 1ri6A00

Molscript image for 1ri6A00
1ri6A00
PDB coordinates for domain 1ri6A00

PDB 1ri6, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.130 7 Propellor
2.130.10 Methylamine Dehydrogenase; Chain H
2.130.10.10 YVTN repeat-like/Quinoprotein amine dehydrogenase Gene3D
2.130.10.10.13
2.130.10.10.13.1
2.130.10.10.13.1.1
2.130.10.10.13.1.1.1
2.130.10.10.13.1.1.1.1

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Segment boundaries for domain 1ri6A00

Chopping figure for domain 1ri6A00
DomainStart PDB ResidueStop PDB Residue
1ri6A00 2 334

Structural Neighbourhood (8 entries)

There are 8 matching structural neighberhood comparisons for CATH ID 2.130.10.10.13.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 8 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1l0qA01 85.82 Methanosarcina mazeiORF492 2.130.10.10 295 18 86 1.85 2.13
1jofA00 82.61 Neurospora crassaCarboxy-cis,cis-muconate cyclase 2.130.10.10 355 15 88 2.21 2.50
1p22A02 79.87 Ubiquitin-dependent protein catabolic processF-box/WD repeat-containing protein 1AHomo sapiensProtein bindingSignal transduction 2.130.10.10 295 8 78 2.56 3.27
1nr0A01 78.73 Caenorhabditis elegansOvipositionLocomotionPositive regulation of locomotionNematode larval development 2.130.10.10 298 11 81 3.21 3.92
1pguB02 77.31 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 323 10 84 3.74 4.40
1fwxA01 75.75 Paracoccus denitrificansNitrous-oxide reductase 2.130.10.10 467 10 66 3.04 4.56
1ijqA01 75.56 Low-density lipoprotein particle clearanceIntestinal cholesterol absorptionVery-low-density lipoprotein receptor activityProtein O-linked glycosylationLow-density lipoprotein receptor 2.120.10.30 254 9 74 3.72 4.97
1pguB01 74.06 Mating projection tipResponse to osmotic stressNucleusActin bindingActin filament depolymerization 2.130.10.10 279 7 74 3.45 4.65
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Displaying entries 1 to 8 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ri6A00
SLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA
LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD
GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD
GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAV
GQGPMWVVVNAHE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ri6A00
MSLKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES
ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSD
DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP
DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA
VGQGPMWVVVNAHEGGSHHHHHH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"