CATH Domain: 1rfsA00 XML data for domain: 1rfsA00

Molscript image for 1rfsA00
1rfsA00
PDB coordinates for domain 1rfsA00

PDB 1rfs, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.102 3-layer Sandwich
2.102.10 Rieske Iron-sulfur Protein
2.102.10.10 'Rieske'-like iron-sulphur domains Gene3D
2.102.10.10.4
2.102.10.10.4.1
2.102.10.10.4.1.1
2.102.10.10.4.1.1.1
2.102.10.10.4.1.1.1.1

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Segment boundaries for domain 1rfsA00

Chopping figure for domain 1rfsA00
DomainStart PDB ResidueStop PDB Residue
1rfsA00 53 179

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 2.102.10.10.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1fqtA00 80.89 Biphenyl degradationBiphenyl 2,3-dioxygenase [EC:1.14.12.18]Biphenyl dioxygenase system ferredoxin subunitBurkholderia xenovorans LB400Metabolic pathways 2.102.10.10 109 14 81 3.34 4.12
3gceA00 80.85 Nocardioides aromaticivoransFerredoxin component of carbazole 1,9a-dioxygenase 2.102.10.10 104 20 76 3.27 4.28
1nykA00 79.37 Rieske iron-sulfur proteinThermus thermophilus 2.102.10.10 156 25 71 2.97 4.14
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1rfsA00
TIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAENKFICPCHGSQY
NNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1rfsA00
FVPPGGGAGTGGTIAKDALGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNAAE
NKFICPCHGSQYNNQGRVVRGPAPLSLALAHCDVDDGKVVFVPWTETDFRTGEAPWWSA
BLAST against CATH

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Domain History Events (4)

Update comment by auto on 16 Oct 2007 19:44

Around September/October 2007, this domain was renamed from "1rfs000" to "1rfsA00" as part of the work to deal with the remediation of the PDB (see http://remediation.wwpdb.org). Please see ticket:207 or wiki:Remediation on the CATH Trac system for more details.

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"