CATH Domain: 1ra0A01 XML data for domain: 1ra0A01

Molscript image for 1ra0A01
1ra0A01
PDB coordinates for domain 1ra0A01

PDB 1ra0, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.30 Roll
2.30.40 Urease, subunit C; domain 1
2.30.40.10 Urease, subunit C, domain 1 Gene3D
2.30.40.10.1
2.30.40.10.1.1
2.30.40.10.1.1.1
2.30.40.10.1.1.1.1
2.30.40.10.1.1.1.1.1

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Segment boundaries for domain 1ra0A01

Chopping figure for domain 1ra0A01
DomainStart PDB ResidueStop PDB Residue
1ra0A01 4 56
1ra0A01 365 426
1ra0A02 57 364

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 2.30.40.10.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3feqA01 84.33 2.30.40.10 105 14 82 3.53 4.27
2qs8A01 83.58 2.30.40.10 99 18 80 3.22 3.98
1p1mA01 83.57 Thermotoga maritima5-methylthioadenosine/S-adenosylhomocysteine deaminase [EC:3.5.4.- 3.5.4.28]5-methylthioadenosine/S-adenosylhomocysteine deaminase 2.30.40.10 103 17 77 3.18 4.11
1yrrA01 82.98 Amino sugar and nucleotide sugar metabolismEscherichia coli O157:H7N-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 92 14 73 3.16 4.28
2pajA01 82.59 2.30.40.10 119 15 78 3.05 3.86
2p9bA01 81.75 Possible prolidase (X-Pro dipeptidase) or chlorohydrolaseBifidobacterium longum 2.30.40.10 101 17 78 3.56 4.55
1o12A01 80.54 Amino sugar and nucleotide sugar metabolismThermotoga maritimaN-acetylglucosamine-6-phosphate deacetylaseN-acetylglucosamine-6-phosphate deacetylase [EC:3.5.1.25] 2.30.40.10 72 19 60 2.13 3.55
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1ra0A01
ALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPDYGIAAGNSANLIILPAENGFDALRRQ
VPVRYSVRGGKVIASTQPAQTTVYLEQPEAIDYKR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1ra0A01
GSSMANNALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITENSLDAEQGLVIPPDYGIAAGNSANLIILPAENG
FDALRRQVPVRYSVRGGKVIASTQPAQTTVYLEQPEAIDYKR
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:38

Assigning to "2.30.40.10" based on similarity with "1k70A01" (NWSI: 97.4789915966387, NWO: 96.7213114754098, SPS: 99.13, SPO: 99, RMSD: 1.11)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1ra0A01"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1ra0A01"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1ra0A01"

Insertion by auto on 05 Mar 2006 23:39

Cut based on decision in database "DomChop" on "cathdb"