CATH Domain: 1r8hA00 XML data for domain: 1r8hA00

Molscript image for 1r8hA00
1r8hA00
PDB coordinates for domain 1r8hA00

PDB 1r8h, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.330 Gene3D
3.30.70.330.8
3.30.70.330.8.1
3.30.70.330.8.1.1
3.30.70.330.8.1.1.1
3.30.70.330.8.1.1.1.1

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Segment boundaries for domain 1r8hA00

Chopping figure for domain 1r8hA00
DomainStart PDB ResidueStop PDB Residue
1r8hA00 281 366

Structural Neighbourhood (48 entries)

There are 48 matching structural neighberhood comparisons for CATH ID 3.30.70.330.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 48 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2fb0A00 80.81 Bacteroides thetaiotaomicronPutative uncharacterized protein 3.30.70.900 91 4 81 3.81 4.69
1iujB00 80.81 TT1380 proteinThermus thermophilus 3.30.70.900 103 9 75 3.24 4.28
1in0A01 80.29 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 14 73 2.64 3.59
2od4B01 80.01 3.30.70.900 81 4 79 3.32 4.19
2bbeA00 79.88 Shewanella oneidensisPutative uncharacterized protein 3.30.70.900 92 1 81 3.37 4.13
1oiaA00 79.80 U1 small nuclear ribonucleoprotein ASpliceosomeSpliceosomal complexHomo sapiensProtein binding 3.30.70.330 90 8 87 4.21 4.80
1no8A00 79.58 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 3 82 3.78 4.57
2pehA01 79.57 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 3 86 3.92 4.55
2ftrA00 79.39 Bacillus haloduransBH0200 protein 3.30.70.900 92 6 82 3.02 3.66
1uw4A00 79.37 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 9 86 4.01 4.63
1tr0A00 79.21 Populus tremulaStable protein 1 3.30.70.900 106 8 77 3.00 3.88
1qm9A02 79.06 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 5 82 3.18 3.88
1konA03 79.01 UPF0082 protein yebCEscherichia coli K-12 3.30.70.980 75 5 81 3.03 3.71
2pgcA02 78.92 3.30.70.900 102 8 77 3.32 4.29
2pgcA01 78.86 3.30.70.900 95 6 82 3.94 4.80
2pd1A01 78.66 Nitrosomonas europaeaPutative uncharacterized protein 3.30.70.900 93 10 81 3.57 4.37
1yx2A02 78.45 Nitrogen metabolismAminomethyltransferase [EC:2.1.2.10]One carbon pool by folateBacillus subtilisGlycine, serine and threonine metabolism 3.30.70.1400 81 9 71 2.84 3.99
1s99A01 78.34 Bacillus subtilisPutative HMP/thiamine-binding protein ykoF 3.30.70.930 77 5 75 3.63 4.79
2od6A00 78.30 3.30.70.900 104 4 77 3.81 4.89
1lfpA03 78.25 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 2 82 3.03 3.66
1usmA00 78.11 Transcriptional coactivatorThermus thermophilus 3.30.1360.20 77 9 71 2.79 3.92
1gmuA01 78.09 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 7 72 3.24 4.47
1earA02 78.02 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 4 74 2.85 3.81
1u7lA01 78.01 V-type H+-transporting ATPase subunit C [EC:3.6.3.14]Oxidative phosphorylationVacuolar acidificationProtein bindingVacuolar proton-transporting V-type ATPase, V1 domain 3.30.70.1180 91 5 80 3.50 4.36
1i1gA02 77.90 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 6 83 3.63 4.33
1mw7A03 77.76 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 2 83 3.21 3.83
1fjeB01 77.72 NucleolinMesocricetus auratus 3.30.70.330 81 6 83 4.06 4.84
1qm9A01 77.63 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexNucleolusMRNA processing 3.30.70.330 98 6 77 3.37 4.35
1q8bA00 77.30 Bacillus subtilisUncharacterized protein yjcS 3.30.70.900 89 8 84 4.08 4.84
2wriY03 77.23 Thermus thermophilus HB8Elongation factor GElongation factor EF-G [EC:3.6.5.3] 3.30.70.870 76 5 82 4.08 4.93
1vlyA02 77.20 RNA modificationTRNA-modifying protein ygfZFolic acid bindingEscherichia coli K-12 3.30.70.1400 84 4 73 2.93 3.98
1ufwA00 77.16 Phosphatidylinositol signaling systemSynaptojanin-2Phosphatidylinositol-bisphosphatase [EC:3.1.3.36]Homo sapiensInositol phosphate metabolism 3.30.70.330 95 9 75 3.54 4.67
3bf4A01 77.15 Ralstonia eutropha JMP134Ethyl tert-butyl ether degradation EthD 3.30.70.900 92 4 79 3.12 3.93
2qycA00 76.98 Bordetella bronchisepticaPutative uncharacterized protein 3.30.70.900 94 4 85 3.22 3.78
1r31A01 76.71 Pseudomonas mevalonii3-hydroxy-3-methylglutaryl-coenzyme A reductase 3.30.70.420 110 6 70 3.38 4.77
3bb5D00 76.59 Jannaschia sp. CCS1Stress responsive alpha-beta 3.30.70.900 102 4 78 3.66 4.67
3bdeA00 76.13 Mll5499 proteinMesorhizobium loti 3.30.70.900 93 6 78 3.45 4.40
1eayD00 76.07 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 1 78 3.66 4.68
1kohA01 75.98 Nuclear RNA export factor 1Homo sapiensProtein binding 3.30.70.330 97 4 75 3.39 4.50
1j4wA01 75.44 Transcription from RNA polymerase II promoterFar upstream element-binding proteinSequence-specific DNA binding transcription factor activityFar upstream element-binding protein 1Nucleus 3.30.1370.10 74 5 79 3.19 4.02
3bn7A00 75.41 Caulobacter vibrioidesPutative uncharacterized protein 3.30.70.900 96 5 84 4.06 4.81
1sxlA00 75.20 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingNegative regulation of translation 3.30.70.330 97 8 80 3.56 4.43
1jqgA01 75.04 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 12 78 3.89 4.99
2j8sA03 74.93 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1320 100 5 76 3.43 4.51
1rjjA00 74.91 Arabidopsis thalianaUncharacterized protein At5g22580Chloroplast 3.30.70.900 110 4 79 3.82 4.83
1kn6A00 73.85 Mus musculusPeptide hormone processingSerine-type endopeptidase activityNeuroendocrine convertase 1Proprotein convertase subtilisin/kexin type 1 [EC:3.4.21.93] 3.30.70.850 73 1 77 3.28 4.26
1sqgA03 72.77 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 3 62 2.96 4.77
1vk8A00 71.97 Thermotoga maritimaPutative uncharacterized protein 3.30.70.930 91 4 76 3.83 4.98
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Displaying entries 1 to 48 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r8hA00
SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLG
FMSMHLL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r8hA00
SSATPIVQFQGESNCLKCFRYRLNDKHRHLFDLISSTWHWASPKAPHKHAIVTVTYHSEEQRQQFLNVVKIPPTIRHKLG
FMSMHLL
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:00

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:27

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"