CATH Domain: 1r7jA00 XML data for domain: 1r7jA00

Molscript image for 1r7jA00
1r7jA00
PDB coordinates for domain 1r7jA00

PDB 1r7j, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.10 Arc Repressor Mutant, subunit A
1.10.10.10 "winged helix" repressor DNA binding domain Gene3D
1.10.10.10.5
1.10.10.10.5.1
1.10.10.10.5.1.1
1.10.10.10.5.1.1.1
1.10.10.10.5.1.1.1.1

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Segment boundaries for domain 1r7jA00

Chopping figure for domain 1r7jA00
DomainStart PDB ResidueStop PDB Residue
1r7jA00 3 92

Structural Neighbourhood (66 entries)

There are 66 matching structural neighberhood comparisons for CATH ID 1.10.10.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 66 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qvoA00 87.90 Archaeoglobus fulgidusUncharacterized protein AF_1382 1.10.10.10 87 17 83 2.44 2.93
1yg2A01 87.27 Vibrio cholerae pathogenic cycleVibrio choleraePadR family transcriptional regulator, regulatory protein AphAPutative uncharacterized protein 1.10.10.10 79 11 77 2.30 2.96
2qm3A01 86.57 Pyrococcus furiosusPutative uncharacterized protein 1.10.10.10 81 19 75 2.73 3.61
1stzA01 86.31 Thermotoga maritimaHeat-inducible transcription repressor hrcAHeat-inducible transcriptional repressor 1.10.10.10 85 15 84 2.80 3.32
3ctaA01 85.90 Riboflavin metabolismRiboflavin kinaseRiboflavin kinase, archaea type [EC:2.7.1.161]Thermoplasma acidophilum 1.10.10.10 84 13 80 2.18 2.73
2f2eA01 85.75 Pseudomonas aeruginosaPutative uncharacterized protein 1.10.10.10 89 11 85 3.91 4.57
1tbxB00 85.62 Sulfolobus virus 1Protein F-93 1.10.10.10 89 15 87 3.32 3.78
2fnaA03 84.98 Sulfolobus solfataricusPutative uncharacterized protein 1.10.10.10 72 11 72 3.09 4.28
2g7uA01 84.88 Rhodococcus opacusPutative regulator of catechol degradative operon 1.10.10.10 74 17 75 3.12 4.13
1ub9A00 84.88 Pyrococcus horikoshiiPutative uncharacterized protein PH1061 1.10.10.10 100 11 81 3.35 4.14
2dtrA01 84.71 DtxR family transcriptional regulator, Mn-dependent transcriptional regulatorDiphtheria toxin repressorCorynebacterium diphtheriae 1.10.10.10 71 9 71 2.15 3.02
1r1uB00 84.66 CzrA proteinStaphylococcus aureus 1.10.10.10 93 14 80 3.68 4.56
2hztC00 84.64 Bacillus subtilisUncharacterized HTH-type transcriptional regulator ytcD 1.10.10.10 88 11 86 4.22 4.87
2obpA00 84.26 Ralstonia eutropha JMP134Putative DNA-binding protein 1.10.10.10 77 14 73 2.48 3.38
3elkB00 84.19 Putative uncharacterized protein Ta0346Thermoplasma acidophilum 1.10.10.10 98 11 85 3.96 4.62
2eshA00 84.01 Thermotoga maritimaPutative uncharacterized protein 1.10.10.10 114 15 78 3.31 4.19
1on2A01 83.82 Bacillus subtilisTranscriptional regulator mntR 1.10.10.10 72 12 72 2.53 3.50
1z05A01 83.76 Vibrio choleraeTranscriptional regulator, ROK family 1.10.10.10 72 8 65 2.58 3.94
2o0yC01 83.65 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 73 9 63 1.97 3.11
2o0yB01 83.64 Rhodococcus jostii RHA1Transcriptional regulator 1.10.10.10 64 10 65 2.43 3.71
2ia2C01 83.48 Rhodococcus sp. DK17PcaR 1.10.10.10 60 16 63 2.09 3.30
1in4A02 83.17 Holliday junction DNA helicase RuvBThermotoga maritimaHomologous recombinationHolliday junction ATP-dependent DNA helicase ruvB 1.10.10.10 73 10 74 3.32 4.46
1lvaA03 82.99 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 62 6 63 2.46 3.88
2ijlB00 82.86 Agrobacterium tumefaciens str. C58Molybdenum-binding transcriptional repressorMolybdate transport system regulatory protein 1.10.10.10 103 15 81 3.88 4.76
1lvaA04 82.70 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 60 10 65 2.55 3.89
1ft9A02 82.69 Rhodospirillum rubrumCooA protein 1.10.10.10 79 12 67 2.27 3.35
1ixcA01 82.47 LysR-type regulatory proteinCupriavidus necator 1.10.10.10 79 16 81 3.57 4.40
2heoA00 82.41 Mus musculusLeft-handed Z-DNA bindingZ-DNA-binding protein 1 1.10.10.10 59 8 61 1.94 3.17
2ia2D01 82.39 Rhodococcus sp. DK17PcaR 1.10.10.10 57 15 60 2.44 4.07
1t6sB02 82.05 Chlorobaculum tepidumSegregation and condensation protein BSegregation and condensation protein B 1.10.10.10 77 15 71 3.19 4.49
1lvaA02 81.92 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 69 7 64 2.70 4.19
1s3jA02 81.89 Bacillus subtilisUncharacterized HTH-type transcriptional regulator yusO 1.10.10.10 62 11 58 1.80 3.06
1qbjC00 81.83 CytoplasmNucleolusHomo sapiensDouble-stranded RNA-specific adenosine deaminaseBase conversion or substitution editing 1.10.10.10 66 9 64 2.27 3.52
1sfuA00 81.59 Yaba-like disease virus34L protein 1.10.10.10 70 4 67 3.04 4.49
1w1wE00 81.55 Nuclear mitotic cohesin complexProtein acetylationChromatin bindingCohesin complex subunit SCC1Establishment of mitotic sister chromatid cohesion 1.10.10.580 70 7 67 2.74 4.04
1cf7B00 81.54 Protein domain specific bindingTranscription factor Dp-2Transcription cofactor activityHomo sapiens 1.10.10.10 82 9 67 2.40 3.54
1lvaA01 81.48 Selenocysteine-specific elongation factorSelenocysteine-specific elongation factorMoorella thermoacetica 1.10.10.10 59 8 57 1.86 3.22
1hstA00 81.43 Histone H1/5Gallus gallusHistone H5 1.10.10.10 74 14 63 2.24 3.54
2hr3D02 81.30 Probable transcriptional regulatorPseudomonas aeruginosa 1.10.10.10 61 8 61 2.14 3.50
1lddA00 81.16 Mitotic sister chromatid segregationProtein ubiquitinationCyclin catabolic processMeiosis - yeastAnaphase-promoting complex subunit 2 1.10.10.10 74 8 64 2.50 3.88
1j5yA01 81.15 Thermotoga maritimaTranscriptional regulator, biotin repressor family 1.10.10.10 64 15 66 2.89 4.33
3cuqB03 81.14 Homo sapiensVacuolar protein-sorting-associated protein 36ESCRT-II complex subunit VPS36Endocytosis 1.10.10.10 69 7 70 3.39 4.84
2jt1A00 81.07 PefI proteinSalmonella enterica subsp. enterica serovar Typhimurium 1.10.10.10 71 14 63 2.24 3.54
2hoeA01 80.94 Thermotoga maritimaTranscriptional regulator, XylR-related 1.10.10.10 57 17 56 1.59 2.81
1ldjA06 80.76 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 68 8 58 2.07 3.52
1u5tB02 80.55 Protein targeting to vacuoleVacuolar protein-sorting-associated protein 36Protein retention in Golgi apparatusUbiquitin bindingEndocytosis 1.10.10.10 69 8 62 2.52 4.05
2gauA02 80.46 Transcriptional regulator, Crp/Fnr familyPorphyromonas gingivalis 1.10.10.10 81 7 76 3.29 4.29
2hgcA00 80.14 Bacillus subtilisUncharacterized protein yjcQ 1.10.10.10 78 12 75 3.56 4.71
2w25A01 79.79 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 1.10.10.10 52 9 55 2.77 4.99
3fxrA01 79.61 LysR type regulator of tsaMBCDComamonas testosteroni 1.10.10.10 92 13 92 3.76 4.07
1o57A01 79.44 Pur operon repressorBacillus subtilisPurine operon repressor 1.10.10.10 72 5 65 2.91 4.44
1ldjA07 79.11 Cullin-1Cell cycle arrestInduction of apoptosis by intracellular signalsUbiquitin mediated proteolysisWnt signaling pathway 1.10.10.10 105 11 56 2.63 4.68
2c6yB00 79.03 Regulation of transcription from RNA polymerase II promoterMagnesium ion bindingSequence-specific DNA bindingForkhead box protein KHomo sapiens 1.10.10.10 95 7 71 3.10 4.33
2jtvA00 78.83 Rhodopseudomonas palustrisPutative uncharacterized protein 1.10.10.10 65 9 63 2.79 4.41
3bwgB01 78.70 GntR family transcriptional regulator, transcriptional regulator of bglABacillus subtilisUncharacterized HTH-type transcriptional regulator yydK 1.10.10.10 68 11 65 3.27 4.99
1oyiA00 78.31 Vaccinia virusDouble-stranded RNA-binding protein 1.10.10.10 62 11 61 2.39 3.91
1e17A00 78.28 Transcription factor bindingNucleusCell cycle arrestForkhead box protein O4Insulin receptor signaling pathway 1.10.10.10 90 7 65 3.05 4.65
1b4aA01 77.56 Geobacillus stearothermophilusArginine repressor 1.10.10.10 59 13 52 2.23 4.27
1cf7A00 77.47 Protein domain specific bindingTranscription factor bindingE2F transcription factor 4/5Transcription factor E2F4TGF-beta signaling pathway 1.10.10.10 67 7 64 2.66 4.13
1b9mB01 76.16 Transcriptional regulator modEMolybdate transport system regulatory proteinEscherichia coli K-12 1.10.10.10 97 7 82 3.94 4.78
1bbyA00 76.00 Basal transcription factorsGeneral transcription factor IIF subunit 2General RNA polymerase II transcription factor activityHomo sapiensTranscription initiation factor TFIIF beta subunit 1.10.10.10 69 8 66 3.16 4.74
1ng6A02 75.18 Hypothetical proteinBacillus subtilisUncharacterized protein yqeY 1.10.10.410 57 10 48 2.29 4.68
1s6lA01 74.53 Alkylmercury lyaseEscherichia coli 1.10.10.10 52 3 54 2.41 4.43
3c18A03 73.66 Exiguobacterium sibiricum 255-15Putative uncharacterized protein 1.10.10.10 54 9 47 2.27 4.75
1zkgA01 70.58 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 19 45 2.27 4.98
2id6A01 70.44 Thermotoga maritimaTranscriptional regulator, TetR family 1.10.10.60 46 21 45 2.24 4.92
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Displaying entries 1 to 66 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r7jA00
KKSKLEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDIRKFNEMRKNMDQ
LKEKINSVLS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r7jA00
AKKKSKLEIIQAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEELLEDIRKFNEMRKNM
DQLKEKINSVLSIRQ
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:39

Cut based on decision in database "DomChop" on "cathdb"