CATH Domain: 1r6tA01 XML data for domain: 1r6tA01

Molscript image for 1r6tA01
1r6tA01
PDB coordinates for domain 1r6tA01

PDB 1r6t, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.287 Helix Hairpins
1.10.287.10 Gene3D
1.10.287.10.3
1.10.287.10.3.1
1.10.287.10.3.1.1
1.10.287.10.3.1.1.1
1.10.287.10.3.1.1.1.1

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Segment boundaries for domain 1r6tA01

Chopping figure for domain 1r6tA01
DomainStart PDB ResidueStop PDB Residue
1r6tA01 7 60
1r6tA02 82 353
1r6tA03 354 467

Structural Neighbourhood (28 entries)

There are 28 matching structural neighberhood comparisons for CATH ID 1.10.287.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 28 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1nkdA00 89.14 Regulatory protein ropEscherichia coli 1.10.287.230 59 11 83 3.03 3.65
1p49A02 87.85 LysosomeSteryl-sulfataseMicrosomeSteryl-sulfatase [EC:3.1.6.2]Plasma membrane 1.10.287.550 59 11 81 2.12 2.61
1jm0A00 87.61 1.20.5.420 48 12 80 3.45 4.27
1skvA00 87.49 Protein D-63Sulfolobus virus 1 1.10.287.660 62 11 75 2.22 2.93
1b3qA01 85.58 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 1.10.287.560 62 5 74 1.69 2.28
3bz1Z00 85.38 PhotosynthesisThermosynechococcus elongatus BP-1Photosystem II reaction center protein ZPhotosystem II PsbZ proteinMetabolic pathways 1.10.287.740 62 7 80 3.24 4.02
1sf9A01 84.57 Bacillus subtilisUncharacterized protein yfhH 1.10.287.880 64 17 65 1.85 2.82
1gaxA05 82.66 Aminoacyl-tRNA biosynthesisValyl-tRNA synthetase [EC:6.1.1.9]Valyl-tRNA synthetaseValine, leucine and isoleucine biosynthesisThermus thermophilus 1.10.287.380 73 3 63 2.07 3.29
1wb7A01 82.63 Superoxide dismutase, Fe-Mn family [EC:1.15.1.1]Sulfolobus solfataricusSuperoxide dismutase [Fe] 1.10.287.990 67 5 68 2.20 3.20
1b04A03 82.29 Geobacillus stearothermophilusDNA ligase 1.10.287.610 62 15 74 2.39 3.22
2hepA00 81.23 Bacillus subtilisUPF0291 protein ynzC 1.10.287.540 42 7 78 3.52 4.46
3brcA01 79.72 Methanothermobacter thermautotrophicus str. Delta HConserved protein 1.10.287.470 34 8 63 2.20 3.47
2py5A04 79.32 DNA polymeraseBacillus phage phi29 1.10.287.690 36 16 67 3.03 4.50
2vqeT00 78.80 Thermus thermophilus HB27Ribosome30S ribosomal protein S20Small subunit ribosomal protein S20 1.20.58.110 99 11 51 1.96 3.80
1r73A00 78.71 RibosomeThermotoga maritimaLarge subunit ribosomal protein L2950S ribosomal protein L29 1.10.287.310 66 9 72 3.55 4.88
1ku9A02 78.48 DNA-binding protein MJ1563Methanocaldococcus jannaschii 1.10.287.450 63 1 71 3.47 4.86
2arhA02 78.25 Aquifex aeolicusPutative uncharacterized protein 1.10.287.870 40 5 57 2.24 3.88
1pd3A00 77.26 Nuclear export proteinInfluenza A virus (A/Puerto Rico/8/1934(H1N1)) 1.10.287.230 54 1 42 0.51 1.20
2nnuA01 76.54 Regulatory protein E2Human papillomavirus type 16Protein binding 1.10.287.30 102 3 50 2.04 4.08
1lvfB00 76.52 Rattus norvegicusSyntaxin-6Syntaxin 6SNARE interactions in vesicular transport 1.20.58.90 104 3 50 2.36 4.72
1nh2D01 76.48 Transcription factor TFIIA complexTranscription initiation factor IIA small subunitGeneral RNA polymerase II transcription factor activityTranscription initiation factor TFIIA small subunitSaccharomyces cerevisiae 1.10.287.190 53 5 49 1.93 3.93
2zinA01 76.44 Aminoacyl-tRNA biosynthesisMethanosarcina mazeiPyrrolysyl-tRNA synthetasePyrrolysyl-tRNA synthetase [EC:6.1.1.26] 1.10.287.540 48 4 44 1.41 3.19
2rldB00 75.99 Bacteroides thetaiotaomicronPutative uncharacterized protein 1.20.1440.60 104 9 42 1.40 3.31
2oyqA04 75.81 DNA polymeraseEnterobacteria phage RB69 1.10.287.690 49 4 71 3.50 4.92
2rjzA01 73.74 Pseudomonas aeruginosaType IV pilus assembly protein PilOPilO protein 1.10.287.540 36 8 59 2.93 4.91
2ra7A00 73.70 Focal adhesion kinase 1Integrin-mediated signaling pathwayCytoskeletonFocal adhesionHomo sapiens 1.20.120.330 128 15 39 1.77 4.44
1e85A00 72.96 Achromobacter xylosoxidansCytochrome c' 1.20.120.10 124 9 37 1.50 3.96
1iurA01 68.49 DendriteCell body fiberNucleusHsp70 protein bindingNegative regulation of inclusion body assembly 1.10.287.110 63 3 34 1.00 2.86
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Displaying entries 1 to 28 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r6tA01
ASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKLVSLKSYKAAAGEDYKA
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r6tA01
MPNSEPASLLELFNSIATQGELVRSLKAGNASKDEIDSAVKXLVSLKXSYKAAAGEDYKA
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 07 Jan 2007 11:50

Assigning to "1.10.287.10" based on similarity with "1fyjA00"

Flow stage update by auto on 07 Jan 2007 11:43

No in_process hits for Domain "1r6tA01" ready to be processed

Flow stage update by auto on 07 Jan 2007 11:42

NW result present for Domain "1r6tA01"

Flow stage update by auto on 22 Dec 2006 19:34

All required files are present for Domain "1r6tA01"

Flow stage update by auto on 21 Dec 2006 15:34

Beginning processing for Domain "1r6tA01"

Insertion by cuff on 21 Dec 2006 13:47

small selection of checked choppings