CATH Domain: 1r6dA01 XML data for domain: 1r6dA01

Molscript image for 1r6dA01
1r6dA01
PDB coordinates for domain 1r6dA01

PDB 1r6d, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.720 NAD(P)-binding Rossmann-like Domain Gene3D
3.40.50.720.9
3.40.50.720.9.1
3.40.50.720.9.1.1
3.40.50.720.9.1.1.1
3.40.50.720.9.1.1.1.1

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Segment boundaries for domain 1r6dA01

Chopping figure for domain 1r6dA01
DomainStart PDB ResidueStop PDB Residue
1r6dA01 1 179
1r6dA01 220 242
1r6dA01 282 297
1r6dA02 180 219
1r6dA02 243 273
1r6dA02 298 322

Structural Neighbourhood (31 entries)

There are 31 matching structural neighberhood comparisons for CATH ID 3.40.50.720.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 31 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ek6A02 88.61 Amino sugar and nucleotide sugar metabolismGalactose metabolismUDP-glucose 4-epimeraseProtein homodimerization activityUDP-glucose 4-epimerase activity 3.40.50.720 218 25 89 1.94 2.16
1n7hA02 88.58 Amino sugar and nucleotide sugar metabolismGDPmannose 4,6-dehydratase [EC:4.2.1.47]Fructose and mannose metabolismCytosolMetabolic pathways 3.40.50.720 231 24 90 1.98 2.20
1e6uA01 86.99 Amino sugar and nucleotide sugar metabolismFructose and mannose metabolismMetabolic pathwaysGDP-L-fucose synthaseGDP-L-fucose synthase [EC:1.1.1.271] 3.40.50.720 220 16 86 2.11 2.43
1i24A01 86.33 Amino sugar and nucleotide sugar metabolismZinc ion bindingGlycolipid biosynthetic processChloroplastSulfotransferase activity 3.40.50.720 235 18 83 2.22 2.66
1vl0B01 86.26 DTDP-4-dehydrorhamnose reductase, rfbD orthologDTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]Streptomycin biosynthesisMetabolic pathwaysPolyketide sugar unit biosynthesis 3.40.50.720 200 21 83 1.75 2.08
1kbzA01 86.15 Streptomycin biosynthesisMetabolic pathwaysPolyketide sugar unit biosynthesisDTDP-4-dehydrorhamnose reductaseSalmonella enterica subsp. enterica serovar Typhimurium 3.40.50.720 213 20 85 2.42 2.82
1wvgA01 86.09 3.40.50.720 193 22 77 1.80 2.32
2hrzA01 85.21 Agrobacterium tumefaciens str. C58Nucleoside-diphosphate-sugar epimerase 3.40.50.720 224 15 90 2.38 2.63
1eq2A01 85.20 Metabolic pathwaysLipopolysaccharide biosynthesisMembraneProtein bindingADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20] 3.40.50.720 202 21 90 2.61 2.87
2bllA01 84.54 Amino sugar and nucleotide sugar metabolismOxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptorHydroxymethyl-, formyl- and related transferase activityUDP-GlcUA decarboxylase/UDP-L-Ara4N formyltransferase [EC:1.1.1.- 2.1.2.-]Bifunctional polymyxin resistance protein ArnA 3.40.50.720 243 23 84 2.08 2.45
3e8xA00 83.02 BH1520 proteinBacillus halodurans 3.40.50.720 204 16 81 3.55 4.37
1gz6B01 82.40 PeroxisomeRattus norvegicusPrimary bile acid biosynthesis3(or 17)beta-hydroxysteroid dehydrogenase activityPeroxisomal multifunctional enzyme type 2 3.40.50.720 219 11 87 3.83 4.39
1uzmB00 82.27 Beta-ketoacyl ACP reductase [EC:1.1.1.100]3-oxoacyl-[acyl-carrier-protein] reductaseMycobacterium tuberculosis 3.40.50.720 210 18 76 2.94 3.84
2ew8B00 81.84 Ethylbenzene degradation(S)-1-Phenylethanol dehydrogenaseAromatoleum aromaticum EbN1 3.40.50.720 228 15 81 3.60 4.41
3gemD00 81.68 Pseudomonas syringae pv. phaseolicola 1448A[EC:1.-.-.-]Oxidoreductase, short chain dehydrogenase/reductase family 3.40.50.720 209 14 82 3.14 3.82
2a4kB01 81.44 3.40.50.720 196 13 72 2.90 4.00
3grpD00 81.41 3-oxoacyl-(Acyl carrierprotein) reductaseBartonella henselae3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]Fatty acid biosynthesisBiosynthesis of unsaturated fatty acids 3.40.50.720 209 15 79 3.21 4.04
2z1nA00 81.39 Aeropyrum pernix3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]Putative dehydrogenaseFatty acid biosynthesisBiosynthesis of unsaturated fatty acids 3.40.50.720 237 11 78 3.60 4.56
2ag5C00 81.35 NAD or NADH bindingMetabolic pathwaysButanoate metabolismCytoplasm3-hydroxybutyrate dehydrogenase type 2 3.40.50.720 244 10 75 3.46 4.59
1spxA00 81.11 Caenorhabditis elegansProtein D1054.8, confirmed by transcript evidenceDetermination of adult lifespan 3.40.50.720 237 14 78 3.56 4.56
1zk4A00 80.94 Lactobacillus brevisR-specific alcohol dehydrogenase 3.40.50.720 244 10 75 3.29 4.34
1cydA00 80.94 Carbonyl reductase (NADPH) activityArachidonic acid metabolismProtein tetramerizationCarbonyl reductase [NADPH] 2Metabolic pathways 3.40.50.720 242 16 76 3.63 4.72
2ztuB00 80.78 Pseudomonas fragiD(-)-3-hydroxybutyrate dehydrogenase 3.40.50.720 207 10 77 3.53 4.58
1zemA00 80.73 Gluconobacter oxydansXylitol dehydrogenase 3.40.50.720 260 14 71 3.33 4.63
3d7lA00 80.53 Listeria innocuaLin1944 protein 3.40.50.720 196 15 75 3.27 4.32
2gasA01 80.44 Medicago sativaIsoflavone reductase 3.40.50.720 188 13 80 3.79 4.69
2qq5A00 80.25 NucleusGolgi apparatusEndoplasmic reticulumHomo sapiensDehydrogenase/reductase SDR family member 1 3.40.50.720 238 14 78 3.31 4.24
1xg5B00 79.91 Dehydrogenase/reductase SDR family member 11Homo sapiens 3.40.50.720 241 13 75 3.47 4.62
2ekpA00 79.85 Pentose and glucuronate interconversionsThermus thermophilus HB82-deoxy-D-gluconate 3-dehydrogenase2-deoxy-D-gluconate 3-dehydrogenase [EC:1.1.1.125] 3.40.50.720 238 15 75 3.02 4.02
3f1lB00 79.58 Uncharacterized oxidoreductase yciKEscherichia coli K-12 3.40.50.720 244 14 74 3.41 4.57
2p91C00 79.41 Enoyl-[acyl-carrier-protein] reductase [NADH]Aquifex aeolicus 3.40.50.720 228 13 84 4.18 4.96
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Displaying entries 1 to 31 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r6dA01
MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI
VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL
VARAYHRTYGLDVRITRCCTDDHCRGIALVLAGGRAGEIYHISLDGGKIERELGYRPQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r6dA01
MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI
VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL
VARAYHRTYGLDVRITRCCTDDHCRGIALVLAGGRAGEIYHISLDGGKIERELGYRPQ
BLAST against CATH

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Domain History Events (6)

Domain assigned by auto on 22 Dec 2006 07:39

Assigning to "3.40.50.720" based on similarity with "1bxkA01"

Flow stage update by auto on 22 Dec 2006 07:36

No in_process hits for Domain "1r6dA01" ready to be processed

Flow stage update by auto on 22 Dec 2006 07:36

NW result present for Domain "1r6dA01"

Flow stage update by auto on 20 Dec 2006 19:31

All required files are present for Domain "1r6dA01"

Flow stage update by auto on 19 Dec 2006 15:28

Beginning processing for Domain "1r6dA01"

Insertion by cuff on 19 Dec 2006 14:38

two nice choppings