CATH Domain: 1r6bX05 XML data for domain: 1r6bX05

Molscript image for 1r6bX05
1r6bX05
PDB coordinates for domain 1r6bX05

PDB 1r6b, Chain X, Domain 5

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.16
1.10.8.60.16.1
1.10.8.60.16.1.1
1.10.8.60.16.1.1.1
1.10.8.60.16.1.1.1.1

[top]
Segment boundaries for domain 1r6bX05

Chopping figure for domain 1r6bX05
DomainStart PDB ResidueStop PDB Residue
1r6bX01 1 141
1r6bX02 169 350
1r6bX03 351 438
1r6bX04 439 652
1r6bX05 653 751

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 1.10.8.60.16.1.1.1.1 (SIMAX score < 5)

[1]
Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1qvrA05 91.79 Thermus thermophilus HB8ATP-dependent Clp protease ATP-binding subunit ClpBChaperone protein clpB 1.10.8.60 94 37 94 1.78 1.87
1um8A02 86.03 Helicobacter pyloriATP-dependent Clp protease ATP-binding subunit clpXATP-dependent Clp protease ATP-binding subunit ClpX 1.10.8.60 97 17 92 3.05 3.28
1im2A03 84.11 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 14 85 4.21 4.90
1l8qA02 74.17 Two-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaAAquifex aeolicus 1.10.8.60 49 18 49 1.91 3.86
[1]
Displaying entries 1 to 4 (page 1 of 1)


[top]
Domain ATOM Sequence 

>pdb|1r6bX05
LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT
VALDKEKNELTYGFQSAQK
BLAST against CATH

[top]
Domain COMBS Sequence 

>pdb|1r6bX05
LSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVT
VALDKEKNELTYGFQSAQKHKAEAAH
BLAST against CATH

[top]
Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"