CATH Domain: 1r6bX03 XML data for domain: 1r6bX03

Molscript image for 1r6bX03
1r6bX03
PDB coordinates for domain 1r6bX03

PDB 1r6b, Chain X, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.9
1.10.8.60.9.1
1.10.8.60.9.1.1
1.10.8.60.9.1.1.1
1.10.8.60.9.1.1.1.1

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Segment boundaries for domain 1r6bX03

Chopping figure for domain 1r6bX03
DomainStart PDB ResidueStop PDB Residue
1r6bX01 1 141
1r6bX02 169 350
1r6bX03 351 438
1r6bX04 439 652
1r6bX05 653 751

Structural Neighbourhood (12 entries)

There are 12 matching structural neighberhood comparisons for CATH ID 1.10.8.60.9.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 12 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2chgA02 84.86 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 18 72 1.88 2.58
1fnnA01 84.46 Pyrobaculum aerophilumCell division control protein 6 (Cdc6), putativeArchaeal cell division control protein 6 1.10.8.60 101 10 78 3.72 4.76
1sxjD02 84.18 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 8 78 2.18 2.78
1njgA02 83.50 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 10 72 2.60 3.58
1njgB01 83.20 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 73 9 72 2.80 3.85
2z4sA02 82.90 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 6 80 2.80 3.47
1im2A03 82.65 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 12 85 3.05 3.58
1sxjC02 82.38 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 13 77 2.57 3.33
1jr3D03 81.22 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 1 78 2.98 3.80
1sxjE02 80.70 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 6 71 2.50 3.49
1ny5B03 80.55 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 13 78 2.73 3.48
1r7rA06 79.82 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 58 8 64 2.76 4.26
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Displaying entries 1 to 12 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r6bX03
IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV
ARIARIPE
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r6bX03
IEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVV
ARIARIPE
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:39

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"