CATH Domain: 1r5yA00 XML data for domain: 1r5yA00

Molscript image for 1r5yA00
1r5yA00
PDB coordinates for domain 1r5yA00

PDB 1r5y, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.105 tRNA-guanine (tRNA-G) transglycosylase Gene3D
3.20.20.105.1
3.20.20.105.1.1
3.20.20.105.1.1.1
3.20.20.105.1.1.1.1
3.20.20.105.1.1.1.1.1

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Segment boundaries for domain 1r5yA00

Chopping figure for domain 1r5yA00
DomainStart PDB ResidueStop PDB Residue
1r5yA00 11 382

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.20.20.105.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1iq8A01 85.47 Pyrococcus horikoshiiQueuine tRNA-ribosyltransferase [EC:2.4.2.29]7-cyano-7-deazaguanine tRNA-ribosyltransferaseConserved protein with predicted RNA binding PUA domain 3.20.20.105 355 23 91 2.37 2.58
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r5yA00
RPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGAERIAKLGGLH
SFMGWDRPILTDSGGYQVMLSLTKQSEEGVTFMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKR
SRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPMLPDDKPHYLMG
VGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEIL
GAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r5yA00
MVEATAQETDRPRFSFSIAAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILGNTYHLMLRPGA
ERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTP
YPATPSRAASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEM
FRVLDFSVPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWDGPINIRNARFSEDLKPLDSECHC
AVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYFARNS
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:57

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:23

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"