CATH Domain: 1r5bA03 XML data for domain: 1r5bA03

Molscript image for 1r5bA03
1r5bA03
PDB coordinates for domain 1r5bA03

PDB 1r5b, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.40 Beta Barrel
2.40.30 Elongation Factor Tu (Ef-tu); domain 3
2.40.30.10 Translation factors Gene3D
2.40.30.10.15
2.40.30.10.15.1
2.40.30.10.15.1.1
2.40.30.10.15.1.1.1
2.40.30.10.15.1.1.1.1

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Segment boundaries for domain 1r5bA03

Chopping figure for domain 1r5bA03
DomainStart PDB ResidueStop PDB Residue
1r5bA01 215 463
1r5bA02 464 552
1r5bA03 553 662

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 2.40.30.10.15.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1wb1B03 79.83 Methanococcus maripaludisMJ0495-like protein 2.40.30.10 112 10 86 4.25 4.91
1kjzA03 79.81 Pyrococcus abyssiTranslation initiation factor eIF-2 gamma subunitTranslation initiation factor 2 subunit gamma 2.40.30.10 92 15 71 2.08 2.90
2hmaA03 78.11 TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [EC:2.1.1.61]TRNA-specific 2-thiouridylase mnmAStreptococcus pneumoniae 2.40.30.10 89 11 70 2.64 3.77
1aipE03 76.55 Elongation factor Tu-AElongation factor EF-Tu [EC:3.6.5.3]Thermus thermophilus 2.40.30.10 56 30 50 1.38 2.71
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r5bA03
PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCME
RFEDYQYMGRFTLRDQGTTVAVGKVVKILD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r5bA03
PVHATTRFIAQIAILELPSILTTGYSCVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCME
RFEDYQYMGRFTLRDQGTTVAVGKVVKILD
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:38

Cut based on decision in database "DomChop" on "cathdb"