CATH Domain: 1r55A00 XML data for domain: 1r55A00

Molscript image for 1r55A00
1r55A00
PDB coordinates for domain 1r55A00

PDB 1r55, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.390 Collagenase (Catalytic Domain)
3.40.390.10 Collagenase (Catalytic Domain) Gene3D
3.40.390.10.5
3.40.390.10.5.1
3.40.390.10.5.1.1
3.40.390.10.5.1.1.1
3.40.390.10.5.1.1.1.1

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Segment boundaries for domain 1r55A00

Chopping figure for domain 1r55A00
DomainStart PDB ResidueStop PDB Residue
1r55A00 208 410

Structural Neighbourhood (1 entries)

There are 1 matching structural neighberhood comparisons for CATH ID 3.40.390.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 1 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2ddfA00 82.14 Cell surfaceEpithelial cell signaling in Helicobacter pylori infectionSH3 domain bindingAlzheimer's diseaseInterleukin-6 receptor binding 3.40.390.10 253 22 79 2.84 3.59
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Displaying entries 1 to 1 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r55A00
TRKYLELYIVADHTLFLTRHRNLQHTKQRLLEVANYVDQLLRTLDIQVALTGLEVWTERDRSRVTQDANATLWAFLQWRR
GLWAQRPHDSAQLLTGRAFQGATVGLAPVEGMCRAESSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVEAAAE
SGGCVMAAATGHPFPRVFSACSRRQLRAFFRKGGGACLSNAPS
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r55A00
EARRTRKYLELYIVADHTLFLTRHRNLQHTKQRLLEVANYVDQLLRTLDIQVALTGLEVWTERDRSRVTQDANATLWAFL
QWRRGLWAQRPHDSAQLLTGRAFQGATVGLAPVEGMCRAESSGGVSTDHSELPIGAAATMAHEIGHSLGLSHDPDGCCVE
AAAESGGCVMAAATGHPFPRVFSACSRRQLRAFFRKGGGACLSNAPSGHHHHHH
BLAST against CATH

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Domain History Events (5)

Domain assigned by auto on 28 Apr 2006 18:36

Assigning to "3.40.390.10" based on similarity with "1r54A00" (NWSI: 100, NWO: 100, SPS: 97.61, SPO: 98, RMSD: 0.56)

Flow stage update by auto on 28 Apr 2006 17:50

NW result present for Domain "1r55A00"

Flow stage update by auto on 28 Apr 2006 17:44

All required files are present for Domain "1r55A00"

Flow stage update by auto on 27 Apr 2006 17:31

Beginning processing for Domain "1r55A00"

Insertion by auto on 05 Mar 2006 23:38

Cut based on decision in database "DomChop" on "cathdb"