CATH Domain: 1r46A02 XML data for domain: 1r46A02

Molscript image for 1r46A02
1r46A02
PDB coordinates for domain 1r46A02

PDB 1r46, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.1180 Golgi alpha-mannosidase II Gene3D
2.60.40.1180.10
2.60.40.1180.10.1
2.60.40.1180.10.1.1
2.60.40.1180.10.1.1.1
2.60.40.1180.10.1.1.1.15

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Segment boundaries for domain 1r46A02

Chopping figure for domain 1r46A02
DomainStart PDB ResidueStop PDB Residue
1r46A01 32 324
1r46A02 325 421

Structural Neighbourhood (16 entries)

There are 16 matching structural neighberhood comparisons for CATH ID 2.60.40.1180.10.1.1.1.15 (SIMAX score < 5)

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Displaying entries 1 to 16 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ktbA02 89.48 Alpha-N-acetylgalactosaminidaseGallus gallus 2.60.40.1180 91 25 89 1.57 1.76
3cc1A02 86.37 BH1870 proteinBacillus halodurans 2.60.40.1180 84 9 83 2.12 2.55
1j0hA04 82.37 NeopullulanaseGeobacillus stearothermophilus 2.60.40.1180 83 19 80 2.45 3.05
1wzlA04 82.13 Neopullulanase 2Thermoactinomyces vulgaris 2.60.40.1180 83 9 80 2.46 3.07
1ea9C04 80.42 Bacillus sp.Cyclomaltodextrinase 2.60.40.1180 81 6 78 2.49 3.18
1uokA03 79.85 Bacillus cereusOligo-1,6-glucosidase 2.60.40.1180 78 6 74 2.93 3.95
3edfA03 79.10 CyclomaltodextrinaseFlavobacterium sp. 92 2.60.40.1180 80 15 79 3.30 4.17
1zjaA03 78.57 Pseudomonas mesoacidophilaSucrose isomerase 2.60.40.1180 78 10 73 3.17 4.33
1m7xA03 78.41 Starch and sucrose metabolismMetabolic pathways1,4-alpha-glucan branching enzyme [EC:2.4.1.18]Glycogen biosynthetic process1,4-alpha-glucan-branching enzyme 2.60.40.1180 106 8 81 3.76 4.63
1g5aA04 78.21 AmylosucraseNeisseria polysaccharea 2.60.40.1180 74 12 72 3.45 4.77
1qwrA02 77.39 Amino sugar and nucleotide sugar metabolismBacillus subtilisMannose-6-phosphate isomerase [EC:5.3.1.8]Putative mannose-6-phosphate isomerase yvyIFructose and mannose metabolism 2.60.120.10 86 4 69 2.51 3.62
1iv8A05 77.12 Sulfolobus acidocaldariusGlycosyltrehalose-producing enzyme 2.60.40.1180 66 12 65 2.61 3.99
1rwhA03 77.03 Chondroitinase (Chondroitin lyase)Arthrobacter aurescens 2.60.220.10 114 7 69 3.12 4.50
1hn0A04 75.87 Chondroitin ABC endolyase 1Proteus vulgaris 2.60.220.10 122 4 69 3.44 4.94
2bs9A01 75.79 Geobacillus stearothermophilusBeta-xylosidase 2.60.40.1500 136 11 62 3.00 4.80
1lwjA03 74.13 4-alpha-glucanotransferase [EC:2.4.1.25]Thermotoga maritimaStarch and sucrose metabolism4-alpha-glucanotransferaseMetabolic pathways 2.60.40.1180 50 14 49 2.14 4.32
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Displaying entries 1 to 16 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r46A02
GKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLR
SHINPTGTVLLQLENTM
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r46A02
GKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIGGPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLR
SHINPTGTVLLQLENTMQMSLKDLL
BLAST against CATH

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Domain History Events (5)

Domain move by cuff on 26 Apr 2006 13:29

COMMENT: Ali - evalues, HMM overlaps, SSAP score and SAS score all good. Superposition very nice. SCOP suggests they are in the same superfamily. I think we can merge these at the H level. FINAL: Lesley - Merge these H and T-levels based on the excellent scores and SCOP concurrs. Alison, this is a case of needing to merge both the H and T-levels. Not just T-levels. Consider if 1ktbA02 is misclassified...does not look like an Ig-fold to me. (LESLEY) - Move S35 level for 1ktbA02 into 2.60.120.10. (((Lesley-No, move S35 level into 2.60.40.1180. There was a problem on Homolcheck which led to the wrong assignment. The HMM scores clearly indicate that this belongs to 2.60.40.1180. See HomolCheck pages for the further supporting nice hits.)))

Flow stage update by cuff on 26 Apr 2006 13:29

COMMENT: Ali - evalues, HMM overlaps, SSAP score and SAS score all good. Superposition very nice. SCOP suggests they are in the same superfamily. I think we can merge these at the H level. FINAL: Lesley - Merge these H and T-levels based on the excellent scores and SCOP concurrs. Alison, this is a case of needing to merge both the H and T-levels. Not just T-levels. Consider if 1ktbA02 is misclassified...does not look like an Ig-fold to me. (LESLEY) - Move S35 level for 1ktbA02 into 2.60.120.10. (((Lesley-No, move S35 level into 2.60.40.1180. There was a problem on Homolcheck which led to the wrong assignment. The HMM scores clearly indicate that this belongs to 2.60.40.1180. See HomolCheck pages for the further supporting nice hits.)))

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:38

Cut based on decision in database "DomChop" on "cathdb"