CATH Domain: 1r2jA03 XML data for domain: 1r2jA03

Molscript image for 1r2jA03
1r2jA03
PDB coordinates for domain 1r2jA03

PDB 1r2j, Chain A, Domain 3

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.20 Up-down Bundle
1.20.140 Butyryl-CoA Dehydrogenase, subunit A; domain 3
1.20.140.10 Butyryl-CoA Dehydrogenase, subunit A, domain 3 Gene3D
1.20.140.10.5
1.20.140.10.5.1
1.20.140.10.5.1.1
1.20.140.10.5.1.1.1
1.20.140.10.5.1.1.1.1

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Segment boundaries for domain 1r2jA03

Chopping figure for domain 1r2jA03
DomainStart PDB ResidueStop PDB Residue
1r2jA01 3 106
1r2jA02 107 212
1r2jA03 213 365

Structural Neighbourhood (7 entries)

There are 7 matching structural neighberhood comparisons for CATH ID 1.20.140.10.5.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 7 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ivhA03 91.59 Isovaleryl-CoA dehydrogenase, mitochondrialHomo sapiens 1.20.140.10 141 25 92 1.33 1.44
1siqA03 91.51 Fatty acid metabolismGlutaryl-CoA dehydrogenase [EC:1.3.99.7]Glutaryl-CoA dehydrogenase activityHomo sapiensGlutaryl-CoA dehydrogenase, mitochondrial 1.20.140.10 155 22 92 1.99 2.16
2uxwA01 87.57 Fatty acid metabolismEnergy derivation by oxidation of organic compoundsMitochondrial nucleoidMetabolic pathwaysVery long-chain specific acyl-CoA dehydrogenase, mitochondrial 1.20.140.10 186 22 77 1.44 1.86
2ddhA03 87.21 Fatty acid metabolismPeroxisomeRattus norvegicusPPAR signaling pathwayPalmitoyl-CoA oxidase activity 1.20.140.10 157 14 84 1.61 1.90
1w07A04 81.47 Fatty acid metabolismBiosynthesis of plant hormonesLong-chain fatty acid metabolic processMetabolic pathwaysArabidopsis thaliana 1.20.140.10 129 6 81 3.16 3.89
1u8vB03 80.12 Gamma-aminobutyrate metabolism dehydratase/isomeraseClostridium aminobutyricum 1.20.140.10 213 13 65 2.43 3.72
1sj8A02 77.92 Mus musculusTalin-1Focal adhesionCell-substrate junction assemblyCortical actin cytoskeleton organization 1.20.1440.10 122 13 79 3.97 4.97
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Displaying entries 1 to 7 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r2jA03
SLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHMVPA
TILAKHVAAERAAAGAATAAQVLASAGAGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALALP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r2jA03
SLPMLVAASLAYGRKSVAWGCVGILRACRTAAVAHARTREQFGRPLGDHQLVAGHIADLWTAEQIAARVCEYASDHWDEG
SPEMVPATILAKHVAAERAAAGAATAAQVLASAGAREGHVVERAYRDAKLMEIIEGSSEMCRVMLAQHALALPA
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:37

Cut based on decision in database "DomChop" on "cathdb"