CATH Domain: 1r26A00 XML data for domain: 1r26A00

Molscript image for 1r26A00
1r26A00
PDB coordinates for domain 1r26A00

PDB 1r26, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.11
3.40.30.10.11.1
3.40.30.10.11.1.1
3.40.30.10.11.1.1.1
3.40.30.10.11.1.1.1.1

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Segment boundaries for domain 1r26A00

Chopping figure for domain 1r26A00
DomainStart PDB ResidueStop PDB Residue
1r26A00 -7 105

Structural Neighbourhood (34 entries)

There are 34 matching structural neighberhood comparisons for CATH ID 3.40.30.10.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 34 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1gh2A00 91.34 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 24 92 1.24 1.33
2vimA00 90.37 Fasciola hepaticaThioredoxin (TRX) 3.40.30.10 104 34 90 1.20 1.33
2pu9C00 90.10 Thioredoxin F-type, chloroplasticSpinacia oleraceaProtein binding 3.40.30.10 111 27 95 2.14 2.24
2e0qA00 90.07 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 25 91 1.51 1.66
1thxA00 89.06 Nostoc sp. PCC 7120Thioredoxin-2 3.40.30.10 108 20 92 1.65 1.78
1w4vA00 88.70 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 23 94 1.84 1.94
3gnjA00 88.58 Desulfitobacterium hafniense DCB-2Thioredoxin domain protein 3.40.30.10 107 15 92 3.38 3.67
2f51A00 87.56 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 23 85 1.70 1.98
2dizA00 87.13 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 27 94 2.46 2.62
1v98A00 86.36 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 28 78 2.00 2.54
1mekA00 84.06 Cell surfaceER-Golgi intermediate compartmentProtein disulfide isomerase activityProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 120 20 92 3.35 3.62
2c0gA01 83.51 Protein targeting to GolgiRegulation of multicellular organism growthProtein homodimerization activityEmbryo development ending in birth or egg hatchingDrosophila melanogaster 3.40.30.10 122 9 85 2.64 3.10
3gixA00 83.44 Thioredoxin-like protein 4BHomo sapiens 3.40.30.10 133 10 75 2.00 2.63
2av4A00 83.31 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 8 79 3.43 4.33
1a8yA02 83.25 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 102 9 85 2.53 2.95
1wouA00 82.87 Thioredoxin domain-containing protein 17Tumor necrosis factor-mediated signaling pathwayProtein bindingCytosolProtein-disulfide reductase activity 3.40.30.10 119 13 83 2.69 3.23
1qgvA00 82.81 SpliceosomeSpliceosomal complexU5 snRNP protein, DIM1 familyHomo sapiensProtein binding 3.40.30.10 130 11 82 2.33 2.83
1bjxA00 82.17 Cell surfaceProtein disulfide isomerase activityER-Golgi intermediate compartmentProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 110 9 86 2.65 3.06
2trcP01 82.06 PhosducinRattus norvegicus 3.40.30.10 131 19 77 3.13 4.02
2in3A01 81.78 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 12 66 1.89 2.85
1sjiA03 79.40 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 8 82 3.35 4.08
2qsiA01 79.14 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 3.40.30.10 82 10 69 2.21 3.20
1g7eA00 78.84 Rattus norvegicusEndoplasmic reticulum lumenEndoplasmic reticulum protein 29Transport vesicleEndoplasmic reticulum resident protein 29 3.40.30.10 122 10 82 3.42 4.13
1h75A00 77.54 Glutaredoxin-like protein NrdHGlutaredoxin-like protein nrdHEscherichia coli K-12 3.40.30.10 76 21 64 2.59 4.01
1ttzA00 77.40 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 13 63 2.60 4.08
3f9uA00 76.76 Bacteroides fragilis NCTC 9343Putative exported cytochrome C biogenesis-related protein 3.40.30.10 139 10 73 3.50 4.77
2okaA00 75.80 Pseudomonas aeruginosaSelenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 84 9 64 2.85 4.41
1egoA00 75.80 Glutaredoxin 1Glutaredoxin-1Protein bindingEscherichia coli K-12 3.40.30.10 85 12 68 3.32 4.87
2p0gB00 75.34 Vibrio choleraeSelenoprotein W-related proteinSelenoprotein W-related protein 3.40.30.10 79 10 62 2.86 4.55
2fa8B00 75.33 Agrobacterium tumefaciens str. C58Selenoprotein W-related proteinPutative uncharacterized protein 3.40.30.10 86 13 63 3.13 4.91
1nm3A02 74.96 Peroxiredoxin (alkyl hydroperoxide reductase subunit C) [EC:1.11.1.15]Haemophilus influenzaeHybrid peroxiredoxin hyPrx5 3.40.30.10 70 14 58 2.62 4.49
1t1vA00 74.18 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 6 66 2.99 4.50
1iloA00 73.12 Methanothermobacter thermautotrophicus str. Delta HConserved protein 3.40.30.10 77 7 64 3.11 4.81
1u6tA00 71.80 CytoplasmSH3 domain-binding glutamic acid-rich-like proteinNucleusHomo sapiensSH3/SH2 adaptor activity 3.40.30.10 120 7 65 2.97 4.57
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Displaying entries 1 to 34 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1r26A00
IRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQL
PTFIIARSGKMLGHVIGANPGMLRQKLRDIIKD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1r26A00
MRGWHHHHHHGIRMRARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNS
EIVSKCRVLQLPTFIIARSGKMLGHVIGANPGMLRQKLRDIIKDN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:34

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"