CATH Domain: 1qzmA00 XML data for domain: 1qzmA00

Molscript image for 1qzmA00
1qzmA00
PDB coordinates for domain 1qzmA00

PDB 1qzm, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.60 Gene3D
1.10.8.60.6
1.10.8.60.6.1
1.10.8.60.6.1.1
1.10.8.60.6.1.1.1
1.10.8.60.6.1.1.1.1

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Segment boundaries for domain 1qzmA00

Chopping figure for domain 1qzmA00
DomainStart PDB ResidueStop PDB Residue
1qzmA00 491 584

Structural Neighbourhood (13 entries)

There are 13 matching structural neighberhood comparisons for CATH ID 1.10.8.60.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 13 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1r6bX03 84.28 ATP-dependent Clp protease ATP-binding subunit clpAATP-dependent Clp protease ATP-binding subunit ClpAProtein bindingEscherichia coli K-12 1.10.8.60 88 11 86 3.23 3.75
2z4sA02 82.15 Thermotoga maritimaTwo-component systemChromosomal replication initiator proteinChromosomal replication initiator protein dnaA 1.10.8.60 72 15 75 2.58 3.42
1im2A03 81.55 ATP-dependent hsl protease ATP-binding subunit hslUHaemophilus influenzaeATP-dependent HslUV protease ATP-binding subunit HslU 1.10.8.60 94 12 87 3.39 3.89
1sxjD02 81.14 DNA replicationNucleotide excision repairLeading strand elongationCell cycle checkpointProtein binding 1.10.8.60 70 11 74 2.39 3.21
1jr3D03 80.52 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 71 9 73 2.47 3.36
1njgA02 80.25 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 66 10 70 3.03 4.32
1ny5B03 80.17 Transcriptional regulator (NtrC family)Two-component system, NtrC family, response regulatorAquifex aeolicus 1.10.8.60 74 20 77 2.93 3.77
1jqjD03 79.59 Pyrimidine metabolismDNA replicationPurine metabolismMetabolic pathwaysHomologous recombination 1.10.8.60 86 8 73 3.25 4.43
1e32A04 78.79 Mus musculusPolyubiquitin bindingProtein complexAggresome assemblyTransitional endoplasmic reticulum ATPase 1.10.8.60 87 11 81 3.86 4.71
3bosA02 78.53 DnaA-homolog proteinShewanella amazonensis SB2BRegulatory inactivation of DnaA Hda protein 1.10.8.60 59 15 62 2.77 4.41
1sxjE02 78.52 Leading strand elongationNucleotide excision repairDNA replicationReplication factor C subunit 3/5Sister chromatid cohesion 1.10.8.60 64 6 68 2.82 4.14
1sxjC02 77.86 Nucleotide excision repairDNA replicationLeading strand elongationReplication factor C subunit 3Replication factor C subunit 3/5 1.10.8.60 69 10 73 3.27 4.45
2chgA02 77.34 Archaeoglobus fulgidusReplication factor C small subunitReplication factor C small subunit 1.10.8.60 66 6 70 3.06 4.36
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Displaying entries 1 to 13 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qzmA00
SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEI
NGDNLHDYLGVQRF
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qzmA00
SGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLKHIEI
NGDNLHDYLGVQRF
BLAST against CATH

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Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:37

Cut based on decision in database "DomChop" on "cathdb"