CATH Domain: 1qyrA01 XML data for domain: 1qyrA01

Molscript image for 1qyrA01
1qyrA01
PDB coordinates for domain 1qyrA01

PDB 1qyr, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.16
3.40.50.150.16.2
3.40.50.150.16.2.1
3.40.50.150.16.2.1.1
3.40.50.150.16.2.1.1.1

Segment boundaries for domain 1qyrA01

Chopping figure for domain 1qyrA01
DomainStart PDB ResidueStop PDB Residue
1qyrA01 17 200
1qyrA02 201 268

Structural Neighbourhood (22 entries)

There are 22 matching structural neighberhood comparisons for CATH ID 3.40.50.150.16.2.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 22 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3ftdA01 85.18 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 28 87 2.70 3.07
1qamA01 84.86 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 28 78 2.01 2.57
1i9gA02 80.20 POSSIBLE RNA METHYLTRANSFERASETRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Mycobacterium tuberculosis 3.40.50.150 184 15 82 3.36 4.06
2yvlA02 80.01 TRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Aquifex aeolicusPutative uncharacterized protein 3.40.50.150 189 12 79 3.03 3.80
1sqgA04 79.76 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.40.50.150 198 11 75 2.63 3.47
1l3iA00 79.47 Methanothermobacter thermautotrophicus str. Delta HPorphyrin and chlorophyll metabolismProbable cobalt-precorrin-6Y C(15)-methyltransferase [decarboxylating]Precorrin-8W decarboxylase [EC:1.-.-.-]Metabolic pathways 3.40.50.150 178 12 80 3.39 4.22
1i4wA01 79.45 Mitochondrial intermembrane spaceMitochondrial transcription factor 1Mitochondrial matrixMitochondrial DNA-directed RNA polymerase complexSaccharomyces cerevisiae 3.40.50.150 247 13 74 2.66 3.57
1o54A02 79.31 Thermotoga maritimaTRNA (adenine-N1-)-methyltransferase [EC:2.1.1.36]Putative uncharacterized protein 3.40.50.150 193 10 79 2.87 3.62
1m6yA01 79.13 Thermotoga maritimaS-adenosyl-methyltransferase [EC:2.1.1.-]S-adenosyl-L-methionine-dependent methyltransferase mraW 3.40.50.150 180 12 76 3.33 4.34
2fpoC00 78.76 Ribosomal RNA small subunit methyltransferase D [EC:2.1.1.52]RRNA (guanine-N2-)-methyltransferase activityRRNA base methylationProtein bindingEscherichia coli K-12 3.40.50.150 176 13 78 3.32 4.24
2b3tA02 78.02 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 10 77 3.02 3.88
3c6kB03 77.59 Spermine synthaseArginine and proline metabolismSpermine synthase [EC:2.5.1.22]Glutathione metabolismMetabolic pathways 3.40.50.150 187 9 79 3.35 4.20
1nv8A02 76.65 Thermotoga maritimaMethyltransferase [EC:2.1.1.-]HemK protein 3.40.50.150 197 11 80 3.96 4.90
3c3pA00 75.72 Geobacter sulfurreducensPutative uncharacterized protein 3.40.50.150 178 14 73 3.26 4.42
1xxlA00 75.63 Uncharacterized methyltransferase ycgJBacillus subtilis 3.40.50.150 231 8 67 3.32 4.88
1af7A02 75.37 Bacterial chemotaxisTwo-component systemChemotaxis protein methyltransferase CheR [EC:2.1.1.80]Salmonella enterica subsp. enterica serovar TyphimuriumChemotaxis protein methyltransferase 3.40.50.150 194 5 69 3.34 4.79
3cvoA00 75.09 Ruegeria pomeroyiPutative uncharacterized protein 3.40.50.150 186 11 70 3.36 4.75
2py6A03 74.96 Methylobacillus flagellatus KTMethyltransferase FkbM 3.40.50.150 177 9 72 3.09 4.25
1pjzA00 74.74 Pseudomonas syringae pv. pisiThiopurine S-methyltransferase 3.40.50.150 201 6 77 3.74 4.82
2efjA02 74.08 Coffea canephora3,7-dimethylxanthine methyltransferase 3.40.50.150 211 6 74 3.69 4.93
1gdhA02 73.56 Glycerate dehydrogenaseHyphomicrobium methylovorum 3.40.50.720 184 5 61 2.88 4.67
2gcgA02 73.42 Glyoxylate reductase (NADP+) [EC:1.1.1.79]Hydroxypyruvate reductase activityExcretionPyruvate metabolismNAD or NADH binding 3.40.50.720 189 7 63 3.14 4.97
Displaying entries 1 to 22 (page 1 of 1)


Domain ATOM Sequence

>pdb|1qyrA01
QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN
FGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEV
PPSAFTPPPKVDSAVVRLVPHATM    

Domain COMBS Sequence

>pdb|1qyrA01
QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN
FGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEV
PPSAFTPPPKVDSAVVRLVPHATM    

Domain History Events (3)

Insertion by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Flow stage update by sillitoe on 06 Mar 2006 15:40

HomCheck 'Assigned H' domains

Insertion by auto on 05 Mar 2006 23:37

Cut based on decision in database "DomChop" on "cathdb"