CATH Domain: 1qupA01 XML data for domain: 1qupA01

Molscript image for 1qupA01
1qupA01
PDB coordinates for domain 1qupA01

PDB 1qup, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.70 Alpha-Beta Plaits
3.30.70.100 Gene3D
3.30.70.100.7
3.30.70.100.7.1
3.30.70.100.7.1.1
3.30.70.100.7.1.1.1
3.30.70.100.7.1.1.1.1

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Segment boundaries for domain 1qupA01

Chopping figure for domain 1qupA01
DomainStart PDB ResidueStop PDB Residue
1qupA01 2 71
1qupA02 72 222

Structural Neighbourhood (85 entries)

There are 85 matching structural neighberhood comparisons for CATH ID 3.30.70.100.7.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 85 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1osdA00 90.38 Hypothetical periplasmic mercuric ion binding proteinCupriavidus metallidurans CH34 3.30.70.100 72 14 90 1.33 1.47
1mwyA00 88.54 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Detoxification of zinc ionLead, cadmium, zinc and mercury-transporting ATPaseEscherichia coli K-12Response to cadmium ion 3.30.70.100 73 10 89 1.62 1.82
1yjrA00 88.47 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 75 17 88 1.53 1.74
2kt2A00 86.50 Mercuric reductasePseudomonas aeruginosaMercuric reductase [EC:1.16.1.1] 3.30.70.100 69 17 89 1.83 2.04
1opzA00 85.78 Cu2+-exporting ATPase [EC:3.6.3.4]Bacillus subtilisCopper-exporting P-type ATPase A 3.30.70.100 76 19 89 2.13 2.38
1harA02 85.67 Human immunodeficiency virus type 1 BH10Gag-Pol polyprotein 3.30.70.270 69 7 85 2.95 3.45
2g9oA00 85.41 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Trans-Golgi networkCellular copper ion homeostasis 3.30.70.100 77 20 84 2.19 2.59
2nyiA01 83.87 3.30.70.260 77 16 81 2.65 3.24
1y3jA00 83.51 Cu2+-exporting ATPase [EC:3.6.3.4]Copper-dependent protein bindingCopper-transporting ATPase 1Cellular copper ion homeostasisTrans-Golgi network 3.30.70.100 77 20 84 2.10 2.49
2x3dF01 82.80 Hypothetical proteinSulfolobus solfataricusPutative uncharacterized protein 3.30.70.1340 84 13 77 2.59 3.35
1in0A01 82.66 Hypothetical proteinHaemophilus influenzaeUPF0234 protein HI_1034 3.30.70.860 70 8 88 2.54 2.87
2ofhX00 81.53 Cd2+/Zn2+-exporting ATPase [EC:3.6.3.3 3.6.3.5]Zinc-transporting ATPaseSynechocystis sp. PCC 6803 3.30.70.100 71 7 87 3.17 3.63
1gmuA01 81.03 Klebsiella aerogenesUrease accessory protein ureE 3.30.70.790 67 10 82 2.99 3.63
1eayD00 81.01 Bacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Escherichia coli K-12Chemotaxis protein cheA 3.30.70.400 69 7 91 3.48 3.81
1y7pB01 80.84 Archaeoglobus fulgidusUncharacterized protein AF_1403 3.30.70.260 80 5 80 2.64 3.30
2f1fA01 80.80 Valine, leucine and isoleucine biosynthesisMetabolic pathwaysButanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesis 3.30.70.260 79 7 82 2.88 3.50
2w25A02 80.48 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory proteinLeucine-responsive regulatory proteinMycobacterium tuberculosis 3.30.70.920 81 11 75 2.71 3.60
2qmwA03 80.35 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysPrephenate dehydratase [EC:4.2.1.51]Similar to chorismate mutaseStaphylococcus aureus subsp. aureus Mu50 3.30.70.260 73 8 82 3.26 3.97
1earA02 80.20 Sporosarcina pasteuriiUrease accessory protein ureE 3.30.70.790 69 13 84 3.34 3.97
1nm2A01 79.96 Fatty acid biosynthesisStreptomyces coelicolorMalonyl CoA:acyl carrier protein malonyltransferase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Metabolic pathways 3.30.70.250 68 8 89 3.20 3.57
1vi7A02 79.64 IMPACT family member yigZProtein bindingEscherichia coli K-12 3.30.70.240 71 8 84 3.09 3.66
1vr6A01 79.55 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysThermotoga maritima3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]Phospho-2-dehydro-3-deoxyheptonate aldolase 3.30.70.1140 75 2 81 3.14 3.86
1mw7A03 79.35 Helicobacter pyloriUPF0082 protein HP_0162 3.30.70.980 75 8 84 3.26 3.88
3ce8A00 79.09 Shewanella baltica OS155Putative uncharacterized protein 3.30.70.120 87 8 73 3.20 4.35
2fmrA00 79.04 CytoplasmSoluble fractionNucleolusHomo sapiensFragile X mental retardation 1 protein 3.30.1370.10 65 6 83 3.27 3.90
2dy1A03 78.64 Thermus thermophilus HB8Elongation factor EF-G [EC:3.6.5.3]Elongation factor G (EF-G-2) 3.30.70.870 76 7 89 4.27 4.77
2nzcA00 78.21 Thermotoga maritimaPutative uncharacterized protein 3.30.70.1150 77 10 80 3.74 4.64
1u0sA00 78.07 Thermotoga maritimaBacterial chemotaxisTwo-component systemTwo-component system, chemotaxis family, sensor kinase CheA [EC:2.7.13.3]Protein binding 3.30.70.1110 86 11 75 2.99 3.96
1cvjA01 78.00 Poly(A) RNA bindingTranslation activator activityProtein C-terminus bindingMRNA polyadenylationPolyadenylate-binding protein 1 3.30.70.330 77 10 81 3.20 3.91
2pehA01 77.97 Splicing factor 45SpliceosomeHomo sapiensProtein bindingSplicing factor 45 3.30.70.330 83 10 75 3.61 4.76
2rhsD06 77.74 Aminoacyl-tRNA biosynthesisStaphylococcus haemolyticus JCSC1435Phenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chain 3.30.70.380 88 10 68 3.05 4.47
2i0xA01 77.54 Pyrococcus furiosusPutative uncharacterized protein 3.30.70.240 66 15 82 3.87 4.70
1utaA00 77.35 Membrane fractionCell cycle cytokinesisCell division protein FtsNCell division protein ftsNProtein binding 3.30.70.1070 77 8 85 3.56 4.15
1wr8A02 77.31 Pyrococcus horikoshiiPhosphoglycolate phosphatase 3.90.1070.10 69 4 78 3.13 4.00
2hfvA01 77.26 Rhodopseudomonas palustrisPutative uncharacterized protein 3.30.70.790 77 5 83 3.11 3.74
1q5yD00 77.26 CopG family transcriptional regulator, nickel-responsive regulatorNickel-responsive regulatorProtein bindingEscherichia coli K-12 3.30.70.1150 80 2 81 3.56 4.38
2dclA00 77.04 Pyrococcus horikoshiiUPF0166 protein PH1503 3.30.70.120 99 16 67 2.75 4.06
2do0A01 77.02 Protein domain specific bindingIntegral to plasma membraneParaspecklesAlternative nuclear mRNA splicing, via spliceosomeHeterogeneous nuclear ribonucleoprotein M 3.30.70.330 76 5 82 3.45 4.16
1sqgA03 76.92 Ribosomal RNA small subunit methyltransferase B [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase BRRNA (cytosine-C5-)-methyltransferase activityRRNA base methylationEscherichia coli K-12 3.30.70.1170 58 10 85 3.75 4.40
2nyiA02 76.89 3.30.70.260 89 14 74 3.57 4.81
1zpvB00 76.89 ACT domain-containing proteinUPF0237 protein SP_0238Streptococcus pneumoniae 3.30.70.260 81 7 76 3.47 4.53
2qmxA03 76.85 Prephenate dehydratase [EC:4.2.1.51]Phenylalanine, tyrosine and tryptophan biosynthesisChlorobaculum tepidumMetabolic pathwaysPrephenate dehydratase 3.30.70.260 90 8 72 3.22 4.46
1fjeB01 76.83 NucleolinMesocricetus auratus 3.30.70.330 81 7 79 3.81 4.82
2j8sA02 76.75 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 103 7 64 2.74 4.28
1fxlA02 76.70 AU-rich element bindingELAV like protein 2/3/4MRNA processingHomo sapiensELAV-like protein 4 3.30.70.330 77 4 79 3.20 4.04
1no8A00 76.55 THO complex subunit 4Mus musculusSpliceosomeSingle-stranded DNA bindingRNA binding 3.30.70.330 78 4 79 3.70 4.65
1i1gA02 76.55 Pyrococcus furiosusHTH-type transcriptional regulator lrpALrp/AsnC family transcriptional regulator, regulator for asnA, asnC and gidA 3.30.70.920 77 5 80 3.55 4.41
1nzaA00 76.50 Thermus thermophilus HB8Divalent-cation tolerance protein cutAPeriplasmic divalent cation tolerance protein 3.30.70.830 103 8 62 2.88 4.63
3bzqA00 76.47 Two-component systemNitrogen regulatory protein P-II 1Nitrogen regulatory protein P-IIMycobacterium tuberculosis 3.30.70.120 99 8 63 2.80 4.40
2hiyB01 76.35 Streptococcus pneumoniaePutative uncharacterized protein 3.30.70.1280 87 7 72 3.47 4.79
1lfpA03 76.32 UPF0082 protein aq_1575Aquifex aeolicus 3.30.70.980 73 5 82 3.81 4.64
2pn6A02 76.29 150aa long hypothetical transcriptional regulatorSulfolobus tokodaii 3.30.70.920 98 10 69 3.14 4.53
1jqgA01 76.29 Carboxypeptidase AHelicoverpa armigera 3.30.70.340 91 10 70 3.44 4.89
2nuhA00 76.17 Xylella fastidiosaPeriplasmic divalent cation tolerance proteinPeriplasmic divalent cation tolerance protein 3.30.70.830 104 14 62 2.88 4.61
1mlaA01 76.04 Fatty acid biosynthesisMetabolic pathwaysMalonyl CoA-acyl carrier protein transacylase[acyl-carrier-protein] S-malonyltransferase [EC:2.3.1.39]Escherichia coli K-12 3.30.70.250 73 11 84 4.01 4.72
1xtzA02 76.01 Identical protein bindingNucleusRibose-5-phosphate isomerasePyridoxine biosynthetic processRibose 5-phosphate isomerase A [EC:5.3.1.6] 3.30.70.260 84 10 64 3.11 4.84
2vh7A00 75.80 Acylphosphatase activityAcylphosphatase-1Pyruvate metabolismHomo sapiensPhosphate metabolic process 3.30.70.100 94 10 65 2.64 4.00
1x5oA01 75.78 RNA processingHomo sapiensProtein bindingRNA-binding motif, single-stranded-interacting protein 1 3.30.70.330 86 7 75 3.41 4.51
2hzcA00 75.77 Splicing factor U2AF 65 kDa subunitSpliceosomeSpliceosomal complexSplicing factor U2AF 65 kDa subunitEnzyme binding 3.30.70.330 87 7 75 3.70 4.88
3c19A01 75.75 Methanopyrus kandleriUncharacterized conserved protein 3.30.70.1380 98 7 64 2.97 4.62
1x5uA01 75.70 SpliceosomeSpliceosomal complexHomo sapiensSplicing factor 3B subunit 4Splicing factor 3B subunit 4 3.30.70.330 80 5 81 3.72 4.58
1f0xA01 75.68 Pyruvate metabolismD-lactate dehydrogenaseNAD or NADH bindingEscherichia coli K-12D-lactate dehydrogenase [EC:1.1.1.28] 3.30.70.610 100 7 68 2.99 4.40
2ivyA01 75.67 Sulfolobus solfataricusPutative uncharacterized protein 3.30.70.240 74 5 82 3.95 4.79
1uw4A00 75.54 Regulator of nonsense transcripts 3BNuclear-transcribed mRNA catabolic process, nonsense-mediated decayHomo sapiensProtein binding 3.30.70.330 90 7 71 3.27 4.60
2fgcA03 75.46 Butanoate metabolismC5-Branched dibasic acid metabolismPantothenate and CoA biosynthesisValine, leucine and isoleucine biosynthesisMetabolic pathways 3.30.70.1150 74 11 77 3.54 4.60
2vooA02 75.41 TRNA modificationNucleolusMRNA bindingProtein bindingLupus La protein 3.30.70.330 89 11 74 3.68 4.96
1qm9A02 75.33 Polypyrimidine tract-binding protein 1Poly-pyrimidine tract bindingHeterogeneous nuclear ribonucleoprotein complexMRNA processingNucleolus 3.30.70.330 89 7 76 3.58 4.69
1lfwA02 75.15 Lactobacillus delbrueckii subsp. lactisBeta-Ala-Xaa dipeptidase 3.30.70.360 106 10 59 2.83 4.76
1jx4A02 75.12 DNA polymerase IV (archaeal DinB-like DNA polymerase) [EC:2.7.7.7]DNA polymerase IVSulfolobus solfataricus 3.30.70.270 96 7 62 2.90 4.64
1dj0A02 75.10 TRNA pseudouridine synthesisTRNA pseudouridine synthase ATRNA bindingPseudouridine synthase activityTRNA pseudouridine synthase A [EC:5.4.99.12] 3.30.70.580 107 8 61 2.90 4.70
2j8sA06 75.09 Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 familyAcriflavine resistance protein BProtein bindingEscherichia coli K-12 3.30.70.1430 105 7 60 2.79 4.58
1pytA00 75.00 Bos taurusCarboxypeptidase A1 [EC:3.4.17.1]Carboxypeptidase A1 3.30.70.340 94 10 71 3.44 4.83
1b7yB06 74.94 Aminoacyl-tRNA biosynthesisPhenylalanyl-tRNA synthetase beta chain [EC:6.1.1.20]Phenylalanyl-tRNA synthetase beta chainThermus thermophilus 3.30.70.380 86 5 69 3.03 4.34
1tr0A00 74.91 Populus tremulaStable protein 1 3.30.70.900 106 16 64 2.82 4.40
3sxlA02 74.86 Sex differentiationDrosophila melanogasterProtein complexPoly-pyrimidine tract bindingImaginal disc growth 3.30.70.330 55 5 70 3.38 4.79
2ia0B02 74.81 Pyrococcus furiosusUncharacterized HTH-type transcriptional regulator PF0864 3.30.70.920 99 13 67 2.98 4.40
2qfjA02 74.74 Homo sapiensPoly(U)-binding-splicing factor PUF60Protein binding 3.30.70.330 87 14 72 3.50 4.83
2pgcA01 74.72 3.30.70.900 95 7 70 3.48 4.93
1l6rA02 74.57 Thermoplasma acidophilumPhosphoglycolate phosphatase 3.90.1070.10 63 3 77 3.37 4.32
1iujB00 74.50 TT1380 proteinThermus thermophilus 3.30.70.900 103 7 60 2.81 4.67
1uv7A00 74.48 Vibrio choleraeGeneral secretion pathway protein M 3.30.1360.100 74 4 67 3.25 4.81
3e3xA02 74.05 Vibrio parahaemolyticusBipAGTP-binding protein 3.30.70.240 83 5 72 3.40 4.70
2bopA00 73.63 Regulatory protein E2Bovine papillomavirus type 1 3.30.70.330 85 7 67 2.99 4.46
2dgsA01 73.40 CytoplasmDAZ-associated protein 1NucleusRNA bindingHomo sapiens 3.30.70.330 89 5 76 3.74 4.89
1mwqA00 71.71 Hypothetical proteinHaemophilus influenzaeUncharacterized protein HI_0828 3.30.70.1060 98 8 66 3.22 4.85
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Displaying entries 1 to 85 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qupA01
TTNDTYEATYAIPHCENCVNDIKACLKNVPGINSLNFDIEQQISVESSVAPSTIINTLRNCGKDAIIR
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qupA01
TTNDTYEATYAIPXHCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDAIIR
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:59

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:38

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"