CATH Domain: 1qu6A01 XML data for domain: 1qu6A01

Molscript image for 1qu6A01
1qu6A01
PDB coordinates for domain 1qu6A01

PDB 1qu6, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.30 2-Layer Sandwich
3.30.160 Double Stranded RNA Binding Domain
3.30.160.20 Gene3D
3.30.160.20.7
3.30.160.20.7.1
3.30.160.20.7.1.2
3.30.160.20.7.1.2.1
3.30.160.20.7.1.2.1.1

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Segment boundaries for domain 1qu6A01

Chopping figure for domain 1qu6A01
DomainStart PDB ResidueStop PDB Residue
1qu6A01 1 85
1qu6A02 104 179

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.30.160.20.7.1.2.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2b7vA00 86.82 Rattus norvegicusNucleolusDouble-stranded RNA-specific editase 1MRNA modificationNucleoplasm 3.30.160.20 71 30 91 1.97 2.15
1qu6A02 84.32 Eukaryotic translation initiation factor 2alpha kinase activityProtein phosphatase type 2A regulator activityInterferon-induced, double-stranded RNA-activated protein kinaseProtein bindingNegative regulation of osteoblast proliferation 3.30.160.20 76 25 89 2.59 2.89
2rqlA00 78.28 Protein bindingPutative sigma-54 modulation proteinEscherichia coli K-12Probable sigma(54) modulation protein 3.30.160.100 95 11 68 3.36 4.91
1l4sA01 77.56 Ribosome-associated inhibitor ARibosome-associated inhibitor ACytosolic small ribosomal subunitEscherichia coli K-12 3.30.160.100 91 12 70 3.31 4.71
2gliA04 67.58 Positive regulation of transcription from RNA polymerase II promoterPositive regulation of DNA replicationEpidermal cell differentiationCytosolRegulation of smoothened signaling pathway 3.30.160.60 31 9 42 1.99 4.64
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qu6A01
GSHMEMAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL
NKEKK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qu6A01
GSHMEMAGDLSAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEIL
NKEKK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:01

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:38

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"