CATH Domain: 1qopB02 XML data for domain: 1qopB02

Molscript image for 1qopB02
1qopB02
PDB coordinates for domain 1qopB02

PDB 1qop, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1100 Gene3D
3.40.50.1100.4
3.40.50.1100.4.1
3.40.50.1100.4.1.1
3.40.50.1100.4.1.1.1
3.40.50.1100.4.1.1.1.1

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Segment boundaries for domain 1qopB02

Chopping figure for domain 1qopB02
DomainStart PDB ResidueStop PDB Residue
1qopB01 9 53
1qopB01 87 205
1qopB02 54 86
1qopB02 206 391

Structural Neighbourhood (5 entries)

There are 5 matching structural neighberhood comparisons for CATH ID 3.40.50.1100.4.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 5 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1p5jA01 84.74 L-serine ammonia-lyase activityProtein homodimerization activityGlycine, serine and threonine metabolismMetabolic pathwaysPyruvate biosynthetic process 3.40.50.1100 223 18 87 2.95 3.36
1tdjA01 83.61 Glycine, serine and threonine metabolismValine, leucine and isoleucine biosynthesisMetabolic pathwaysThreonine dehydratase biosyntheticL-threonine ammonia-lyase activity 3.40.50.1100 223 17 82 2.75 3.31
1v7cA01 82.81 Threonine synthase [EC:4.2.3.1]Vitamin B6 metabolismGlycine, serine and threonine metabolismThreonine synthaseMetabolic pathways 3.40.50.1100 254 20 74 2.55 3.41
1tzkC01 81.28 1-aminocyclopropane-1-carboxylate deaminasePseudomonas sp. ACP 3.40.50.1100 216 17 77 3.15 4.08
1j0aA01 81.06 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]Pyrococcus horikoshiiPropanoate metabolismPutative 1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 220 12 78 3.48 4.43
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Displaying entries 1 to 5 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qopB02
GRPTALTKCQNITAGTRTTLYLKREDLLHGGAHRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGL
IGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEA
LEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDIL
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qopB02
GRPTALTKCQNITAGTRTTLYLKREDLLHGGAHRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGL
IGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEA
LEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILKARGEI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:37

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"