CATH Domain: 1qopB01 XML data for domain: 1qopB01

Molscript image for 1qopB01
1qopB01
PDB coordinates for domain 1qopB01

PDB 1qop, Chain B, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1100 Gene3D
3.40.50.1100.1
3.40.50.1100.1.1
3.40.50.1100.1.1.1
3.40.50.1100.1.1.1.1
3.40.50.1100.1.1.1.1.1

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Segment boundaries for domain 1qopB01

Chopping figure for domain 1qopB01
DomainStart PDB ResidueStop PDB Residue
1qopB01 9 53
1qopB01 87 205
1qopB02 54 86
1qopB02 206 391

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.1100.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1v7cA02 81.59 Threonine synthase [EC:4.2.3.1]Vitamin B6 metabolismGlycine, serine and threonine metabolismThreonine synthaseMetabolic pathways 3.40.50.1100 97 15 59 1.68 2.84
1p5jA02 81.40 Protein homodimerization activityL-serine ammonia-lyase activityGlycine, serine and threonine metabolismPyruvate biosynthetic processMetabolic pathways 3.40.50.1100 96 17 58 1.41 2.41
1j0aA02 79.14 1-aminocyclopropane-1-carboxylate deaminase [EC:3.5.99.7]Pyrococcus horikoshiiPropanoate metabolismPutative 1-aminocyclopropane-1-carboxylate deaminase 3.40.50.1100 104 15 60 2.32 3.80
1v71A02 78.82 Serine racemaseSchizosaccharomyces pombe 3.40.50.1100 97 16 57 2.27 3.96
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qopB01
FGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL
ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIV
REFQ
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qopB01
FGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQFADLLKNYAKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASAL
ASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIV
REFQ
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:19

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:37

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"