CATH Domain: 1qo3C00 XML data for domain: 1qo3C00

Molscript image for 1qo3C00
1qo3C00
PDB coordinates for domain 1qo3C00

PDB 1qo3, Chain C, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.16
3.10.100.10.16.1
3.10.100.10.16.1.2
3.10.100.10.16.1.2.1
3.10.100.10.16.1.2.1.1

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Segment boundaries for domain 1qo3C00

Chopping figure for domain 1qo3C00
DomainStart PDB ResidueStop PDB Residue
1qo3C00 126 258

Structural Neighbourhood (11 entries)

There are 11 matching structural neighberhood comparisons for CATH ID 3.10.100.10.16.1.2.1.1 (SIMAX score < 5)

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Displaying entries 1 to 11 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
3bdwA00 87.36 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 26 93 4.10 4.38
1kza100 86.87 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 14 87 2.42 2.77
1hq8A00 86.65 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 26 94 4.29 4.54
1h8uB00 86.00 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 18 84 2.57 3.05
1jznA00 85.78 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 15 89 3.99 4.45
1byfA00 85.68 LectinPolyandrocarpa misakiensis 3.10.100.10 123 15 85 2.84 3.31
3fd4A00 83.46 Glycoprotein 42Human herpesvirus 4 (strain B95-8) 3.10.100.10 140 18 82 3.44 4.15
1eslA00 82.87 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 17 71 2.92 4.09
1rjhA00 81.56 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 13 82 3.09 3.74
1f00I03 77.45 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 3.10.100.10 98 16 63 3.13 4.91
1cwvA05 77.43 InvasinYersinia pseudotuberculosis 3.10.100.10 100 11 63 2.77 4.34
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Displaying entries 1 to 11 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qo3C00
STVLDSLQHKVYWFCYGMKCYYFVMDRKTWSGCKQTCQSSSLSLLKIDDEDELKFLQLVVPSDSCWVGLSYDNKKKDWAW
IDNRPSKLALNTRKYNIRDGGCMLLSKTRLDNGNCDQVFICICGKRLD
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qo3C00
STVLDSLQHTGRGDKVYWFCYGMKCYYFVMDRKTWSGCKQTCQSSSLSLLKIDDEDELKFLQLVVPSDSCWVGLSYDNKK
KDWAWIDNRPSKLALNTRKYNIRDGGCMLLSKTRLDNGNCDQVFICICGKRLDKFPH
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"