CATH Domain: 1qnrA00 XML data for domain: 1qnrA00

Molscript image for 1qnrA00
1qnrA00
PDB coordinates for domain 1qnrA00

PDB 1qnr, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.20 Alpha-Beta Barrel
3.20.20 TIM Barrel
3.20.20.80 Glycosidases Gene3D
3.20.20.80.8
3.20.20.80.8.1
3.20.20.80.8.1.1
3.20.20.80.8.1.1.1
3.20.20.80.8.1.1.1.1

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Segment boundaries for domain 1qnrA00

Chopping figure for domain 1qnrA00
DomainStart PDB ResidueStop PDB Residue
1qnrA00 1 344

Structural Neighbourhood (10 entries)

There are 10 matching structural neighberhood comparisons for CATH ID 3.20.20.80.8.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 10 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1rh9A00 86.48 Solanum lycopersicumMannan endo-1,4-beta-mannosidase 4 3.20.20.80 370 29 88 2.27 2.55
1uuqA00 83.85 Cellvibrio mixtusMan5A 3.20.20.80 409 20 80 3.05 3.80
1vjzA00 78.64 Endoglucanase [EC:3.2.1.4]Thermotoga maritimaStarch and sucrose metabolismEndoglucanase 3.20.20.80 320 10 77 3.36 4.36
1h1nA00 77.83 EGIThermoascus aurantiacus 3.20.20.80 304 12 79 3.78 4.76
1tg7A01 77.02 Beta-galactosidasePenicillium sp. 3.20.20.80 355 9 85 4.22 4.93
1jz7A03 76.40 Galactose metabolismSphingolipid metabolismOther glycan degradationMetabolic pathwaysLactose catabolic process 3.20.20.80 291 12 70 3.13 4.43
2whlA00 76.37 Beta-mannanaseBacillus sp. N16-5 3.20.20.80 294 10 77 3.28 4.26
1uhvA02 76.37 Thermoanaerobacterium saccharolyticumBeta-xylosidase 3.20.20.80 344 8 80 3.74 4.66
2zumA00 76.30 Endoglucanase [EC:3.2.1.4]Starch and sucrose metabolismPyrococcus horikoshii458aa long hypothetical endo-1,4-beta-glucanase 3.20.20.80 378 11 78 3.83 4.86
2cksB00 75.84 Endoglucanase E-5Thermobifida fusca 3.20.20.80 306 14 78 3.75 4.78
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Displaying entries 1 to 10 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qnrA00
ASSFVTISGTQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGS
TINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANSTA
IFAWELGNEPRCNGCSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTF
HLYPDSWGTNYTWGNGWIQTHAAACLAAGKPCVFEEYGAQQNPCTNEAPWQTTSLTTRGMGGDMFWQWGDTFANGAQSNS
DPYTVWYNSSNWQCLVKNHVDAIN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qnrA00
ASSFVTISGTQFNIDGKVGYFAGTNCYWCSFLTNHADVDSTFSHISSSGLKVVRVWGFNDVNTQPSPGQIWFQKLSATGS
TINTGADGLQTLDYVVQSAEQHNLKLIIPFVNNWSDYGGINAYVNAFGGNATTWYTNTAAQTQYRKYVQAVVSRYANSTA
IFAWELGNEPRCNGCSTDVIVQWATSVSQYVKSLDSNHLVTLGDEGLGLSTGDGAYPYTYGEGTDFAKNVQIKSLDFGTF
HLYPDSWGTNYTWGNGWIQTHAAACLAAGKPCVFEEYGAQQNPCTNEAPWQTTSLTTRGMGGDMFWQWGDTFANGAQSNS
DPYTVWYNSSNWQCLVKNHVDAIN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:56

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:22

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"