CATH Domain: 1qgvA00 XML data for domain: 1qgvA00

Molscript image for 1qgvA00
1qgvA00
PDB coordinates for domain 1qgvA00

PDB 1qgv, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.30 Glutaredoxin
3.40.30.10 Glutaredoxin Gene3D
3.40.30.10.14
3.40.30.10.14.1
3.40.30.10.14.1.1
3.40.30.10.14.1.1.1
3.40.30.10.14.1.1.1.1

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Segment boundaries for domain 1qgvA00

Chopping figure for domain 1qgvA00
DomainStart PDB ResidueStop PDB Residue
1qgvA00 2 138

Structural Neighbourhood (26 entries)

There are 26 matching structural neighberhood comparisons for CATH ID 3.40.30.10.14.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 26 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2av4A00 92.42 SpliceosomeU5 snRNP protein, DIM1 familyPlasmodium yoelii yoeliiDrosophila melanogaster RE13747p 3.40.30.10 135 72 95 3.49 3.65
3gixA00 90.24 Thioredoxin-like protein 4BHomo sapiens 3.40.30.10 133 34 91 1.71 1.86
2vimA00 84.38 Fasciola hepaticaThioredoxin (TRX) 3.40.30.10 104 16 80 1.93 2.41
1gh2A00 84.19 CytoplasmHomo sapiensThioredoxin-like protein 1Disulfide oxidoreductase activity 3.40.30.10 107 14 82 1.85 2.25
2trcP01 83.59 PhosducinRattus norvegicus 3.40.30.10 131 9 86 3.77 4.37
1w4vA00 83.57 Thioredoxin, mitochondrialHomo sapiensThioredoxin 1 3.40.30.10 110 17 83 2.11 2.52
3gnjA00 83.48 Desulfitobacterium hafniense DCB-2Thioredoxin domain protein 3.40.30.10 107 17 81 2.70 3.31
1thxA00 83.23 Nostoc sp. PCC 7120Thioredoxin-2 3.40.30.10 108 13 83 2.25 2.71
2b5eA01 82.72 Protein disulfide isomerase activityProtein disulfide oxidoreductase activityProtein bindingProtein foldingEndoplasmic reticulum lumen 3.40.30.10 119 14 81 2.41 2.96
2e0qA00 82.64 Sulfolobus tokodaii140aa long hypothetical thioredoxinThioredoxin 1 3.40.30.10 104 21 80 2.19 2.74
2pu9C00 82.57 Thioredoxin F-type, chloroplasticSpinacia oleraceaProtein binding 3.40.30.10 111 13 82 2.35 2.86
1a8yA01 82.18 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 124 10 83 3.05 3.67
2dizA00 81.89 Anti-apoptosisHomo sapiensThioredoxin domain-containing protein 5 3.40.30.10 117 15 83 2.54 3.03
1v98A00 81.21 Thermus thermophilus HB8Thioredoxin 2 [EC:1.8.1.8]Thioredoxin 3.40.30.10 92 15 70 2.22 3.14
1sjiA03 80.14 Canis lupus familiarisCalsequestrin-2 3.40.30.10 123 13 87 3.27 3.73
1mekA00 79.89 Cell surfaceER-Golgi intermediate compartmentProtein disulfide isomerase activityProtein bindingPeptidyl-proline hydroxylation to 4-hydroxy-L-proline 3.40.30.10 120 16 86 3.87 4.49
2c0gA01 79.81 Protein targeting to GolgiRegulation of multicellular organism growthProtein homodimerization activityEmbryo development ending in birth or egg hatchingDrosophila melanogaster 3.40.30.10 122 7 84 3.85 4.55
1wouA00 78.37 Thioredoxin domain-containing protein 17Tumor necrosis factor-mediated signaling pathwayProtein bindingCytosolProtein-disulfide reductase activity 3.40.30.10 119 10 80 3.51 4.35
2f51A00 77.84 Trichomonas vaginalisThioredoxin 1Thioredoxin 3.40.30.10 101 14 72 2.66 3.68
2kucA00 77.72 Bacteroides thetaiotaomicronPutative disulphide-isomerase 3.40.30.10 121 14 83 3.49 4.16
1a8yA02 77.41 Calsequestrin-1Oryctolagus cuniculus 3.40.30.10 102 10 78 3.13 3.99
2in3A01 77.23 Nitrosomonas europaeaPutative protein-disulfide isomerasePutative uncharacterized protein 3.40.30.10 78 8 60 2.19 3.65
2qsiA01 76.00 Putative hydrogenase expression/formation protein hupGHydrogenase-1 operon protein HyaERhodopseudomonas palustris 3.40.30.10 82 14 61 2.30 3.74
1ttzA00 75.72 Xanthomonas campestris pv. campestrisPutative uncharacterized protein 3.40.30.10 74 12 56 2.67 4.69
3f9uA00 75.69 Bacteroides fragilis NCTC 9343Putative exported cytochrome C biogenesis-related protein 3.40.30.10 139 8 78 3.29 4.20
1t1vA00 74.55 Mus musculusSH3 domain-binding glutamic acid-rich-like protein 3 3.40.30.10 93 6 59 2.92 4.93
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Displaying entries 1 to 26 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qgvA00
SYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTV
MFFFRNKHIMIDLGINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYST
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qgvA00
MSYMLPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCT
VMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:10

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:34

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"