CATH Domain: 1qfmA01 XML data for domain: 1qfmA01

Molscript image for 1qfmA01
1qfmA01
PDB coordinates for domain 1qfmA01

PDB 1qfm, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.1820 Gene3D
3.40.50.1820.6
3.40.50.1820.6.1
3.40.50.1820.6.1.1
3.40.50.1820.6.1.1.1
3.40.50.1820.6.1.1.1.1

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Segment boundaries for domain 1qfmA01

Chopping figure for domain 1qfmA01
DomainStart PDB ResidueStop PDB Residue
1qfmA01 1 73
1qfmA01 427 705
1qfmA02 74 426

Structural Neighbourhood (4 entries)

There are 4 matching structural neighberhood comparisons for CATH ID 3.40.50.1820.6.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 4 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1orvA02 80.34 Sus scrofaDipeptidyl peptidase 4Dipeptidyl-peptidase 4 [EC:3.4.14.5] 3.40.50.1820 258 16 72 2.33 3.23
1xfdA02 79.70 Homo sapiensDipeptidyl aminopeptidase-like protein 6Dipeptidyl-peptidase activity 3.40.50.1820 259 15 71 2.76 3.84
3f67A00 75.89 Putative dienelactone hydrolaseGamma-Hexachlorocyclohexane degradationKlebsiella pneumoniae subsp. pneumoniae MGH 78578Carboxymethylenebutenolidase [EC:3.1.1.45]Fluorobenzoate degradation 3.40.50.1820 237 13 62 3.09 4.95
3h04A00 75.34 Staphylococcus aureus subsp. aureus Mu50Putative uncharacterized protein 3.40.50.1820 272 12 64 3.09 4.81
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Displaying entries 1 to 4 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qfmA01
MLSFQYPDVYRDETAIQDYHGHKVDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQPIRGLYKERMTELYDYVKGIDASDY
QTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWH
KGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGHAW
TTDYGSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDT
KAGHGAGKPTAKVIEEVSDMFAFIARCLN
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qfmA01
MLSFQYPDVYRDETAIQDYHGHKVXDPYAWLEDPDSEQTKAFVEAQNKITVPFLEQXPIRGLYKERMTELYDYVKGIDAS
DYQTVQIFYPSKDGTKIPMFIVHKKGIKLDGSHPAFLYGYGGFNISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGET
WHKGGILANKQNCFDDFQCAAEYLIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDMLKFHKYTIGH
AWTTDYGXSDSKQHFEWLIKYSPLHNVKLPEADDIQYPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIH
VDTKAGHGAGKPTAKVIEEVSDMFAFIARCLN
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"