CATH Domain: 1qfjA02 XML data for domain: 1qfjA02

Molscript image for 1qfjA02
1qfjA02
PDB coordinates for domain 1qfjA02

PDB 1qfj, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.80 Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module Gene3D
3.40.50.80.11
3.40.50.80.11.1
3.40.50.80.11.1.1
3.40.50.80.11.1.1.1
3.40.50.80.11.1.1.1.1

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Segment boundaries for domain 1qfjA02

Chopping figure for domain 1qfjA02
DomainStart PDB ResidueStop PDB Residue
1qfjA01 1 97
1qfjA02 98 232

Structural Neighbourhood (37 entries)

There are 37 matching structural neighberhood comparisons for CATH ID 3.40.50.80.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 37 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ep3B02 85.34 Lactococcus lactis subsp. cremoris MG1363Dihydroorotate dehydrogenase electron transfer subunitProtein bindingDihydroorotate dehydrogenase electron transfer subunit 3.40.50.80 117 17 84 1.89 2.24
2r6hA02 85.21 Na+-transporting NADH:ubiquinone oxidoreductase subunit F [EC:1.6.5.-]Porphyromonas gingivalisNADH:ubiquinone oxidoreductase, Na translocating, F subunit 3.40.50.80 114 14 79 1.78 2.25
2piaA02 83.51 Burkholderia cepaciaPhthalate dioxygenase reductase 3.40.50.80 121 15 86 3.67 4.23
1lssA00 80.43 Trk system potassium uptake protein TrkATrk system potassium uptake protein trkA homologMethanocaldococcus jannaschii 3.40.50.720 132 6 73 2.64 3.60
2aefA01 79.24 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 4 71 2.58 3.59
1pjqA01 78.95 Porphyrin and chlorophyll metabolismSalmonella enterica subsp. enterica serovar TyphimuriumSiroheme synthaseUroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]Metabolic pathways 3.40.50.720 112 9 74 2.86 3.86
2hmtA00 78.70 Trk system potassium uptake protein TrkABacillus subtilisKtr system potassium uptake protein A 3.40.50.720 139 5 71 2.66 3.73
2c82A01 78.19 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Mycobacterium tuberculosis 3.40.50.720 141 11 82 3.58 4.35
1mioB04 77.50 Nitrogenase molybdenum-iron protein beta chainClostridium pasteurianum 3.40.50.1980 98 10 71 2.96 4.16
1usgA02 77.36 ABC transportersLeucine-specific-binding proteinBranched-chain amino acid transport system substrate-binding proteinEscherichia coli K-12 3.40.50.2300 144 8 65 3.24 4.96
1kyqB01 77.07 Identical protein bindingPrecorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:1.3.1.76 4.99.1.4]Siroheme biosynthetic processMetabolic pathwaysPrecorrin-2 dehydrogenase activity 3.40.50.720 147 6 73 3.46 4.71
3fpcA02 76.98 Entamoeba histolyticaNADP-dependent alcohol dehydrogenase 3.40.50.720 130 6 80 3.66 4.58
1ur5C01 76.80 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 5 73 3.38 4.60
1lluA02 76.69 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 8 75 3.65 4.84
1m1nB03 76.63 Nitrogenase molybdenum-iron protein beta chain [EC:1.18.6.1]Nitrogen metabolismAzotobacter vinelandiiNitrogenase molybdenum-iron protein beta chainMetabolic pathways 3.40.50.1980 106 9 76 3.65 4.78
2pfsA01 76.49 Universal stress protein (Usp)Nitrosomonas europaeaUniversal stress protein A 3.40.50.620 114 6 80 3.96 4.90
1h2bA02 76.49 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 6 76 3.50 4.58
3hhpA01 76.43 Citrate cycle (TCA cycle)Pyruvate metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysMalate dehydrogenase [EC:1.1.1.37] 3.40.50.720 138 2 72 3.23 4.46
1f8fA02 76.14 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 5 75 3.66 4.82
3a06B01 76.02 Terpenoid backbone biosynthesisThermotoga maritima1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]Metabolic pathways 3.40.50.720 141 11 82 3.69 4.49
2x5oA01 75.82 D-Glutamine and D-glutamate metabolismPeptidoglycan biosynthesisMetabolic pathwaysUDP-N-acetylmuramoylalanine--D-glutamate ligaseUDP-N-acetylmuramoylalanine-D-glutamate ligase activity 3.40.50.720 92 10 66 2.83 4.25
3d4oA02 75.78 Dipicolinate synthase subunit ABacillus haloduransDipicolinate synthase subunit A 3.40.50.720 139 5 67 3.20 4.73
1hyeA01 75.68 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 6 70 3.16 4.51
3i28A01 75.65 PeroxisomeSoluble epoxide hydrolase [EC:3.3.2.10]Arachidonic acid metabolismEpoxide hydrolase activityEpoxide hydrolase 2 3.40.50.1000 135 7 79 3.90 4.92
1hyhA01 75.34 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 5 70 3.38 4.81
1qamA01 75.15 Bacillus subtilisRRNA (adenine-N6-)-methyltransferase [EC:2.1.1.48]RRNA adenine N-6-methyltransferase 3.40.50.150 157 9 66 3.06 4.58
1q0qA01 74.86 Terpenoid backbone biosynthesisMetabolic pathways1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267]1-deoxy-D-xylulose-5-phosphate reductoisomerase activity 3.40.50.720 150 5 74 3.66 4.90
1f3lA01 74.70 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 4 70 3.49 4.94
1ydwA01 74.55 Arabidopsis thalianaUncharacterized oxidoreductase At4g09670 3.40.50.720 124 5 72 3.38 4.66
2p2sA01 74.50 Pectobacterium atrosepticumPutative oxidoreductase 3.40.50.720 130 3 71 3.38 4.75
1o6zA02 74.47 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismHaloarcula marismortuiMetabolic pathways 3.40.50.720 142 3 71 3.54 4.98
1j6uA01 74.25 D-Glutamine and D-glutamate metabolismThermotoga maritimaUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Peptidoglycan biosynthesis 3.40.50.720 85 7 61 3.06 4.98
1p3dA01 73.95 D-Glutamine and D-glutamate metabolismUDP-N-acetylmuramate--L-alanine ligaseUDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8]Haemophilus influenzaePeptidoglycan biosynthesis 3.40.50.720 87 5 62 2.99 4.81
3ftdA01 73.59 Dimethyladenosine transferase [EC:2.1.1.-]Ribosomal RNA small subunit methyltransferase AAquifex aeolicus 3.40.50.150 177 5 59 2.81 4.74
3eagA01 73.42 UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase [EC:6.3.2.-]Neisseria meningitidis serogroup BUDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 3.40.50.720 88 11 62 3.08 4.89
1xeaA01 73.08 Vibrio choleraeOxidoreductase, Gfo/Idh/MocA familyVirulence factor 3.40.50.720 117 11 68 3.36 4.88
3d6jA01 73.01 Phosphoglycolate phosphatase [EC:3.1.3.18]Putative haloacid dehalogenase-like hydrolaseBacteroides fragilis NCTC 9343Glyoxylate and dicarboxylate metabolismMetabolic pathways 3.40.50.1000 137 8 78 3.79 4.81
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Displaying entries 1 to 37 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qfjA02
RDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGR
TGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qfjA02
RDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGR
TGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"