CATH Domain: 1qddA00 XML data for domain: 1qddA00

Molscript image for 1qddA00
1qddA00
PDB coordinates for domain 1qddA00

PDB 1qdd, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.10 Roll
3.10.100 Mannose-Binding Protein A; Chain A
3.10.100.10 Mannose-Binding Protein A, subunit A Gene3D
3.10.100.10.5
3.10.100.10.5.1
3.10.100.10.5.1.1
3.10.100.10.5.1.1.1
3.10.100.10.5.1.1.1.1

Segment boundaries for domain 1qddA00

Chopping figure for domain 1qddA00
DomainStart PDB ResidueStop PDB Residue
1qddA00 1 144

Structural Neighbourhood (18 entries)

There are 18 matching structural neighberhood comparisons for CATH ID 3.10.100.10.5.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 18 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1jznA00 92.14 Galactose-specific lectinCrotalus atrox 3.10.100.10 135 31 92 1.28 1.39
1gz2A00 90.83 Peptidoglycan bindingShell calcificationLipopolysaccharide bindingGram-positive bacterial cell surface bindingOvocleidin-17 3.10.100.10 138 28 89 1.43 1.60
1wmzA00 90.27 Cucumaria echinataLectin CEL-I, N-acetyl-D-galactosamine-specific C-type 3.10.100.10 140 26 91 1.74 1.90
2h2tB01 88.64 Positive regulation of nitric-oxide synthase 2 biosynthetic processIntegral to plasma membraneHematopoietic cell lineagePositive regulation of nitric-oxide synthase activityPositive regulation of killing of cells of another organism 3.10.100.10 116 31 79 1.43 1.79
1tn3A00 88.21 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 135 22 88 2.27 2.55
1h8uB00 88.08 Bone marrow proteoglycanHomo sapiensBone marrow proteoglycanExtracellular regionSugar binding 3.10.100.10 116 23 79 1.70 2.15
1kza100 86.55 Rattus norvegicusMannose bindingProtein self-associationMannose-binding lectinMannose-binding protein C 3.10.100.10 115 24 79 1.74 2.20
3hupA00 85.80 CD69 antigenIntegral to plasma membraneEarly activation antigen CD69Homo sapiensTransmembrane receptor activity 3.10.100.10 114 21 79 2.34 2.96
1pwbC00 85.79 Negative regulation of T cell proliferationProtein bindingInnate immune responseLung alveolus developmentEndocytic vesicle 3.10.100.10 150 20 90 3.97 4.41
1rtm100 85.77 Calcium ion bindingMannose bindingRattus norvegicusProtein homodimerization activityExtracellular space 3.10.100.10 149 14 89 3.37 3.78
1byfA00 85.28 LectinPolyandrocarpa misakiensis 3.10.100.10 123 19 80 2.37 2.94
1g1tA01 85.19 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 119 23 77 2.05 2.64
1hq8A00 85.16 Positive regulation of interferon-gamma productionPositive regulation of natural killer cell mediated cytotoxicityPositive regulation of nitric oxide biosynthetic processMHC class I protein bindingNatural killer cell activation 3.10.100.10 123 21 83 2.56 3.07
1sl6A00 84.99 Integral to plasma membraneCell-cell recognitionVirion attachment to host cell surface receptorVirion bindingHomo sapiens 3.10.100.10 168 22 80 3.03 3.74
1eslA00 83.65 Response to tumor necrosis factorCoated pitHeterophilic cell-cell adhesionPerinuclear region of cytoplasmPhospholipase binding 3.10.100.10 157 18 72 1.96 2.70
3bdwA00 83.45 Killer cell lectin-like receptor subfamily D, member 1Natural killer cell mediated cytotoxicityNatural killer cells antigen CD94Antigen processing and presentationGraft-versus-host disease 3.10.100.10 123 26 84 3.03 3.61
1rjhA00 82.38 Skeletal system developmentHomo sapiensTetranectinProtein binding 3.10.100.10 118 22 77 2.33 3.00
1cwvA05 74.03 InvasinYersinia pseudotuberculosis 3.10.100.10 100 11 61 2.90 4.69
Displaying entries 1 to 18 (page 1 of 1)


Domain ATOM Sequence

>pdb|1qddA00
QEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGL
HDPKKNRAWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN    

Domain COMBS Sequence

>pdb|1qddA00
QEAQTELPQARISCPEGTNAYRSYCYYFNEDRETWVDADLYCQNMNSGNLVSVLTQAEGAFVASLIKESGTDDFNVWIGL
HDPKKNRAWHWSSGSLVSYKSWGIGAPSSVNPGYCVSLTSSTGFQKWKDVPCEDKFSFVCKFKN    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:51

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:13

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"