CATH Domain: 1qcxA00 XML data for domain: 1qcxA00

Molscript image for 1qcxA00
1qcxA00
PDB coordinates for domain 1qcxA00

PDB 1qcx, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.160 3 Solenoid
2.160.20 Pectate Lyase C-like
2.160.20.10 Single-stranded right-handed beta-helix, Pectin lyase-like Gene3D
2.160.20.10.3
2.160.20.10.3.1
2.160.20.10.3.1.1
2.160.20.10.3.1.1.1
2.160.20.10.3.1.1.1.1

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Segment boundaries for domain 1qcxA00

Chopping figure for domain 1qcxA00
DomainStart PDB ResidueStop PDB Residue
1qcxA00 1 359

Structural Neighbourhood (2 entries)

There are 2 matching structural neighberhood comparisons for CATH ID 2.160.20.10.3.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 2 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2qy1A00 82.55 Pentose and glucuronate interconversionsXanthomonas campestris pv. campestrisPectate lyase [EC:4.2.2.2]Pectate lyase II 2.160.20.10 330 20 77 3.16 4.05
1pxzA00 81.67 Major pollen allergen Jun a 1Juniperus ashei 2.160.20.10 346 19 77 2.97 3.82
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Displaying entries 1 to 2 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qcxA00
AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS
WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD
SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV
QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG
SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qcxA00
AGVVGAAEGFAHGVTGGGSASPVYPTTTDELVSYLGDNEPRVIILDQTFDFTGTEGTETTTGCAPWGTASQCQVAINLHS
WCDNYQASAPKVSVTYDKAGILPITVNSNKSIVGQGTKGVIKGKGLRVVSGAKNVIIQNIAVTDINPKYVWGGDAITVDD
SDLVWIDHVTTARIGRQHIVLGTSADNRVTISYSLIDGRSDYSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKV
QGNTLLHAVNNLFHNFDGHAFEIGTGGYVLAEGNVFQDVNVVVETPISGQLFSSPDANTNQQCASVFGRSCQLNAFGNSG
SMSGSDTSIISKFAGKTIAAAHPPGAIAQWTMKNAGQGK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:49

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:11

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"