CATH Domain: 1qbkB00 XML data for domain: 1qbkB00

Molscript image for 1qbkB00
1qbkB00
PDB coordinates for domain 1qbkB00

PDB 1qbk, Chain B, Domain 0

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.25 Alpha Horseshoe
1.25.10 Leucine-rich Repeat Variant
1.25.10.10 Leucine-rich Repeat Variant Gene3D
1.25.10.10.13
1.25.10.10.13.1
1.25.10.10.13.1.1
1.25.10.10.13.1.1.1
1.25.10.10.13.1.1.1.1

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Segment boundaries for domain 1qbkB00

Chopping figure for domain 1qbkB00
DomainStart PDB ResidueStop PDB Residue
1qbkB00 3 890

Structural Neighbourhood (0 entries)

Sorry, we could not find any non-redundant representatives with similar structural scores to this domain in CATH.


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Domain ATOM Sequence 

>pdb|1qbkB00
YEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN
FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEI
LDSDRPLNIIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALLHIDSFTENLFALAGDEEPEVRKNVCRALVLLEVRMD
RLLPHHNIVEYLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGKYSDIDIILLKGDVEEDETIPDS
EQDIRPRFHRSRTVAQQHDEDDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKES
GILVLGAIAEGCQGIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLTELLKRILDSNKRVQEA
ACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQLPPLIQKWNLKDEDKD
LFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQALNNAQPDQYEAPDKDFIVALDLLSGLAEGLGGNIEQLVA
RSNILTLYQCQDKPEVRQSSFALLGDLTKACFQHVKPCIADFPILGTNLNPEFISVCNNATWAIGEISIQGIEQPYIPVL
HQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPLQQFIRPWCTSLRNIRDNEEKDSAFRGICTISVNPSGVIQDFI
FFCDAVASWINPKDDLRDFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFYGV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qbkB00
MEYEWKPDEQGLQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHF
QNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSA
EILDSDVLDRPLNIXIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALXLHIDSFTENLFALAGDEEPEVRKNVCRALV
XLLEVRMDRLLPHXHNIVEYXLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGXKYSDIDIILLKG
DVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDELLPHILP
LLKELLFHHEWVVKESGILVLGAIAEGCXQGXIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKP
LXTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPE
YIQXLXPPLIQKWNXLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAXLNNAQPDQYEAPDKDF
XIVALDLLSGLAEGLGGNIEQLVARSNILTLXYQCXQDKXPEVRQSSFALLGDLTKACFQHVKPCIADFXPILGTNLNPE
FISVCNNATWAIGEISIQXGIEXQPYIPXVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPXLQQFIRPWCTS
LRNIRDNEEKDSAFRGICTXISVNPSGVIQDFIFFCDAVASWINPKDDLRDXFCKILHGFKNQVGDENWRRFSDQFPLPL
KERLAAFYGV
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:21

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 14:44

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"