CATH Domain: 1qamA02 XML data for domain: 1qamA02

Molscript image for 1qamA02
1qamA02
PDB coordinates for domain 1qamA02

PDB 1qam, Chain A, Domain 2

CATH CodeLevel DescriptionLinks
1 Mainly Alpha
1.10 Orthogonal Bundle
1.10.8 Helicase, Ruva Protein; domain 3
1.10.8.100 Gene3D
1.10.8.100.1
1.10.8.100.1.1
1.10.8.100.1.1.1
1.10.8.100.1.1.1.1
1.10.8.100.1.1.1.1.1

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Segment boundaries for domain 1qamA02

Chopping figure for domain 1qamA02
DomainStart PDB ResidueStop PDB Residue
1qamA01 10 134
1qamA01 149 180
1qamA02 135 148
1qamA02 181 244

Structural Neighbourhood (3 entries)

There are 3 matching structural neighberhood comparisons for CATH ID 1.10.8.100.1.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 3 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1i4wA02 79.55 Mitochondrial intermembrane spaceMitochondrial transcription factor 1Mitochondrial matrixMitochondrial DNA-directed RNA polymerase complexSaccharomyces cerevisiae 1.10.8.100 75 8 79 3.13 3.94
1qyrA02 79.30 Ribosomal RNA small subunit methyltransferase ARRNA bindingRibosomal small subunit assemblyRRNA (adenine-N6,N6-)-dimethyltransferase activityMRNA binding 1.10.8.100 68 19 74 2.95 3.97
2gqfA03 73.11 Haemophilus influenzaeUncharacterized protein HI_0933 1.10.8.260 60 8 61 3.03 4.92
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Displaying entries 1 to 3 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1qamA02
LLNTKRSLALFLMASRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYKLFNK
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1qamA02
LLNTKRSLALFLMASRISHKDKQKYNYFVMKWVNKEYKKIFTKNQFNNSLKHAGIDDLNNISFEQFLSLFNSYKLFNK
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:02

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"