CATH Domain: 1qamA01 XML data for domain: 1qamA01

Molscript image for 1qamA01
1qamA01
PDB coordinates for domain 1qamA01

PDB 1qam, Chain A, Domain 1

CATH CodeLevel DescriptionLinks
3 Alpha Beta
3.40 3-Layer(aba) Sandwich
3.40.50 Rossmann fold
3.40.50.150 Vaccinia Virus protein VP39 Gene3D
3.40.50.150.84
3.40.50.150.84.1
3.40.50.150.84.1.1
3.40.50.150.84.1.1.1
3.40.50.150.84.1.1.1.1

Segment boundaries for domain 1qamA01

Chopping figure for domain 1qamA01
DomainStart PDB ResidueStop PDB Residue
1qamA01 10 134
1qamA01 149 180
1qamA02 135 148
1qamA02 181 244

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 3.40.50.150.84.1.1.1.1 (SIMAX score < 5)

Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
2b3tA02 80.35 Methyltransferase [EC:2.1.1.-]Protein methyltransferase hemKProtein bindingEscherichia coli K-12 3.40.50.150 192 14 76 3.29 4.33
1f3lA01 79.92 Rattus norvegicusProtein arginine N-methyltransferase 3 [EC:2.1.1.-]Protein arginine N-methyltransferase 3Peptidyl-arginine methylation, to asymmetrical-dimethyl arginineProtein-arginine omega-N asymmetric methyltransferase activity 3.40.50.150 143 9 73 2.78 3.80
2frnA02 78.81 3.40.50.150 185 17 79 3.61 4.54
1pl8A02 78.81 Membrane fractionZinc ion bindingL-iditol 2-dehydrogenase [EC:1.1.1.14]Sorbitol catabolic processGlucose metabolic process 3.40.50.720 139 7 75 3.64 4.84
1dctA01 78.01 Modification methylase HaeIIIHaemophilus aegyptius 3.40.50.150 173 14 67 2.96 4.38
1h2bA02 77.80 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysAeropyrum pernix 3.40.50.720 140 8 77 3.58 4.65
1vj0A02 77.23 Butanoate metabolismThermotoga maritima[EC:1.1.1.-]Alcohol dehydrogenase, zinc-containingFructose and mannose metabolism 3.40.50.720 147 6 74 3.53 4.74
1lluA02 77.17 Tyrosine metabolismFatty acid metabolism1- and 2-Methylnaphthalene degradationMetabolic pathwaysMetabolism of xenobiotics by cytochrome P450 3.40.50.720 138 8 75 3.58 4.76
1f8fA02 76.81 Acinetobacter calcoaceticusBenzyl alcohol dehydrogenase 3.40.50.720 137 8 74 3.67 4.92
2jhfA02 76.77 Tyrosine metabolismDrug metabolism - cytochrome P450Fatty acid metabolismMetabolism of xenobiotics by cytochrome P450Equus caballus 3.40.50.720 139 5 74 3.65 4.90
1piwA02 76.52 NADP-dependent alcohol dehydrogenase 6Alcohol dehydrogenase (NADP+) activityAlcohol metabolic processHydroxymethylfurfural reductase (NADH) activitySoluble fraction 3.40.50.720 137 10 77 3.78 4.90
2aefA01 76.51 Methanothermobacter thermautotrophicus str. Delta HCalcium-gated potassium channel mthK 3.40.50.720 115 11 66 3.13 4.73
1lu9A02 76.24 Methylobacterium extorquens AM1Bifunctional protein mdtA 3.40.50.720 151 3 78 3.76 4.80
1vi2A02 76.09 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysQuinate/shikimate dehydrogenaseQuinate/shikimate dehydrogenase [EC:1.1.1.282]Shikimate 5-dehydrogenase activity 3.40.50.720 147 5 78 3.45 4.37
2eggA02 76.02 Shikimate 5-dehydrogenase [EC:1.1.1.25]Geobacillus kaustophilusPhenylalanine, tyrosine and tryptophan biosynthesisShikimate 5-dehydrogenaseMetabolic pathways 3.40.50.720 140 5 74 3.00 4.03
1nytA02 75.94 Phenylalanine, tyrosine and tryptophan biosynthesisMetabolic pathwaysShikimate 5-dehydrogenase [EC:1.1.1.25]Shikimate dehydrogenaseProtein binding 3.40.50.720 143 12 79 3.85 4.84
1ur5C01 75.28 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Pyruvate metabolismChloroflexus aurantiacus J-10-flMetabolic pathways 3.40.50.720 136 11 65 3.12 4.76
1hyeA01 75.08 Malate dehydrogenase [EC:1.1.1.37]Citrate cycle (TCA cycle)Methanocaldococcus jannaschiiPyruvate metabolismMetabolic pathways 3.40.50.720 147 9 70 3.26 4.65
3hhpA01 74.79 Citrate cycle (TCA cycle)Pyruvate metabolismGlyoxylate and dicarboxylate metabolismMetabolic pathwaysMalate dehydrogenase [EC:1.1.1.37] 3.40.50.720 138 5 66 2.87 4.29
1hyhA01 74.02 Weissella confusaL-2-hydroxyisocaproate dehydrogenase 3.40.50.720 141 7 68 3.18 4.67
Displaying entries 1 to 20 (page 1 of 1)


Domain ATOM Sequence

>pdb|1qamA01
QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK
FPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKREVDISILSMVPREYFHPKPKVNSSLIRLNRKK    

Domain COMBS Sequence

>pdb|1qamA01
MNEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQV
LNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKREVDISILSMVPREYFHPKPKVNSSLI
RLNRKK    

Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 19:12

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"