CATH Domain: 1q9rB02 XML data for domain: 1q9rB02

Molscript image for 1q9rB02
1q9rB02
PDB coordinates for domain 1q9rB02

PDB 1q9r, Chain B, Domain 2

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.60 Sandwich
2.60.40 Immunoglobulin-like
2.60.40.10 Immunoglobulins Gene3D
2.60.40.10.10
2.60.40.10.10.1
2.60.40.10.10.1.1
2.60.40.10.10.1.1.1
2.60.40.10.10.1.1.1.2

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Segment boundaries for domain 1q9rB02

Chopping figure for domain 1q9rB02
DomainStart PDB ResidueStop PDB Residue
1q9rB01 1 111
1q9rB02 112 210

Structural Neighbourhood (109 entries)

There are 109 matching structural neighberhood comparisons for CATH ID 2.60.40.10.10.1.1.1.2 (SIMAX score < 5)

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Displaying entries 1 to 109 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ncwH02 96.09 2.60.40.10 99 86 97 1.01 1.03
1seqH02 95.87 Rattus norvegicusIghg protein 2.60.40.10 98 91 96 0.83 0.86
1q72H02 94.46 2.60.40.10 89 87 91 1.13 1.23
2vxvH02 93.27 2.60.40.10 101 65 96 1.44 1.50
1fv1B02 88.75 HLA class II histocompatibility antigen, DR beta 5 chainMajor histocompatibility complex, class IIType I diabetes mellitusAutoimmune thyroid diseaseIntestinal immune network for IgA production 2.60.40.10 98 19 94 2.45 2.58
1dn0D02 88.50 2.60.40.10 94 27 89 1.88 2.10
1mcpH02 88.45 Mus musculusIg heavy chain V region M603 2.60.40.10 99 28 94 2.46 2.59
1q0xL02 88.28 Mus musculusIg lambda-1 chain V regionProtein binding 2.60.40.10 100 25 95 2.12 2.23
1l6xA02 87.81 Ig gamma-1 chain C regionHomo sapiensProtein bindingAntigen binding 2.60.40.10 106 31 90 1.89 2.09
3dbxA02 87.71 CD1-2 antigenGallus gallus 2.60.40.10 99 20 91 2.20 2.39
1uvqA02 87.36 2.60.40.10 99 25 93 2.10 2.24
1ow0A02 86.51 Homo sapiensProtein bindingIg alpha-1 chain C region 2.60.40.10 109 27 88 2.05 2.30
1o0vA01 86.45 Homo sapiensIg epsilon chain C region 2.60.40.10 102 22 89 1.95 2.19
1t7vA02 86.43 Cell adhesionHomo sapiensZinc-alpha-2-glycoprotein 2.60.40.10 90 21 89 2.39 2.66
3fruA02 86.34 IgG receptor FcRn large subunit p51Beta-2-microglobulin bindingRattus norvegicusHumoral immune responseIgG receptor activity 2.60.40.10 92 15 91 2.16 2.35
1je6A02 85.93 Response to heatMHC class I polypeptide-related sequence BGamma-delta T cell activationImmune response-activating cell surface receptor signaling pathwayResponse to retinoic acid 2.60.40.10 89 14 87 2.13 2.43
3g08A02 85.84 Antigen-presenting glycoprotein CD1d1Endogenous lipid antigen bindingPositive thymic T cell selectionAntigen processing and presentation, exogenous lipid antigen via MHC class IbProtein binding 2.60.40.10 88 18 88 2.15 2.42
1u58A02 85.53 Murine cytomegalovirus (strain K181)Immunoevasin 2.60.40.10 100 13 90 2.44 2.71
1hxmB02 85.32 Homo sapiensT-cell receptor gamma-2 chain C region 2.60.40.10 105 19 89 2.36 2.64
1l6xA01 85.29 Ig gamma-1 chain C regionHomo sapiensProtein bindingAntigen binding 2.60.40.10 100 21 91 2.22 2.44
3h9yA02 85.01 Homo sapiensIg epsilon chain C region 2.60.40.10 108 21 89 2.62 2.92
2fbjH02 84.91 Mus musculusIg heavy chain V region J539 2.60.40.10 73 31 73 2.49 3.40
2bc4D02 84.36 Major histocompatibility complex, class IIType I diabetes mellitusAutoimmune thyroid diseaseIntestinal immune network for IgA productionAllograft rejection 2.60.40.10 107 25 85 3.39 3.94
3h9yB01 84.29 Homo sapiensIg epsilon chain C region 2.60.40.10 101 20 92 2.63 2.86
2bnuB02 84.27 T-cell receptor beta-1 chain C regionHomo sapiensProtein binding 2.60.40.10 126 26 76 1.99 2.58
1dr9A02 83.56 Type I diabetes mellitusIntestinal immune network for IgA productionAutoimmune thyroid diseaseAllograft rejectionT-lymphocyte activation antigen CD80 2.60.40.10 95 15 89 2.70 3.01
2bc4A02 83.23 HLA class II histocompatibility antigen, DM alpha chainHomo sapiensProtein binding 2.60.40.10 109 18 85 2.74 3.21
1mh5B02 83.23 2.60.40.10 52 94 53 0.65 1.21
1hxmA02 82.73 2.60.40.10 85 21 85 2.90 3.39
2rikA01 81.95 TitinOryctolagus cuniculus 2.60.40.10 96 15 85 3.62 4.23
2bk8A00 81.91 Structural constituent of muscleCalcium ion bindingTelethonin bindingSarcomere organizationActin filament binding 2.60.40.10 97 10 82 3.00 3.64
1vcaA01 81.84 Vascular cell adhesion protein 1MicrovillusPositive regulation of T cell proliferationHeterophilic cell-cell adhesionFilopodium 2.60.40.10 89 19 81 3.49 4.29
2ec8A03 81.61 Pathways in cancerHematopoietic cell lineageProto-oncogene tyrosine-protein kinase Kit [EC:2.7.10.1]Acute myeloid leukemiaProtein binding 2.60.40.10 104 12 89 3.63 4.06
2a38B01 81.29 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 99 10 81 2.75 3.36
2v44A01 81.08 Prion diseasesNeural cell adhesion moleculeNeuron cell-cell adhesionPlasma membraneNeural cell adhesion molecule 2 2.60.40.10 94 10 83 3.54 4.24
2j8hA01 80.91 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 97 11 81 2.77 3.40
2ec8A04 80.68 Pathways in cancerHematopoietic cell lineageProto-oncogene tyrosine-protein kinase Kit [EC:2.7.10.1]Extracellular spaceAcute myeloid leukemia 2.60.40.10 100 12 90 3.53 3.92
2rikA02 80.63 TitinOryctolagus cuniculus 2.60.40.10 95 12 82 3.65 4.43
1fhgA00 80.28 TelokinMeleagris gallopavo 2.60.40.10 102 11 82 3.26 3.96
2gy5A04 80.25 MicrovillusCell surfaceTransmembrane receptor protein tyrosine kinase signaling pathwaySignal transductionProtein binding 2.60.40.10 99 13 85 3.68 4.29
3b43A02 80.23 TitinOryctolagus cuniculus 2.60.40.10 97 14 83 2.98 3.57
2j8hA02 80.19 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 98 7 80 3.39 4.21
1zxqA02 80.07 Intercellular adhesion molecule 2Integral to plasma membraneIntercellular adhesion molecule 2Natural killer cell mediated cytotoxicityHomo sapiens 2.60.40.10 107 11 81 3.24 3.98
2ifgA02 80.03 High affinity nerve growth factor receptorIntegral to plasma membraneTransmembrane receptor protein tyrosine kinase activityHomo sapiens 2.60.40.10 90 15 83 3.42 4.10
2rikA03 80.01 TitinOryctolagus cuniculus 2.60.40.10 92 11 80 3.09 3.84
1f00I01 79.73 Pathogenic Escherichia coli infectionIntiminIntiminProtein bindingEscherichia coli O127:H6 str. E2348/69 2.60.40.920 95 8 84 3.53 4.18
1qz1A03 79.71 Rattus norvegicusPrion diseasesNeural cell adhesion moleculePlasma membraneFibroblast growth factor receptor binding 2.60.40.10 95 14 76 3.14 4.12
1nkrA01 79.57 Integral to plasma membraneReceptor activityHomo sapiensNatural killer cell inhibitory signaling pathwayImmune response 2.60.40.10 97 8 88 4.15 4.68
1koaA03 79.53 Caenorhabditis elegansProtein ZK617.1b, partially confirmed by transcript evidenceLocomotionReproduction 2.60.40.10 96 10 78 2.76 3.52
1g1cA00 79.49 Structural constituent of muscleCalcium ion bindingTelethonin bindingSarcomere organizationActin filament binding 2.60.40.10 98 5 84 3.50 4.13
1itbB03 79.44 Platelet-derived growth factor receptor bindingIntegral to plasma membraneHematopoietic cell lineageInterleukin 1 receptor, type IInterleukin-1-mediated signaling pathway 2.60.40.10 112 16 83 3.47 4.18
2ec8A05 79.40 Pathways in cancerHematopoietic cell lineageProto-oncogene tyrosine-protein kinase Kit [EC:2.7.10.1]Extracellular spaceAcute myeloid leukemia 2.60.40.10 81 14 77 3.23 4.18
1gsmA02 79.28 Membrane fractionMucosal vascular addressin cell adhesion molecule 1Intestinal immune network for IgA productionCell adhesionHomo sapiens 2.60.40.10 116 10 78 3.55 4.53
1gl4B00 79.20 Chondrocyte differentiationCardiac muscle tissue developmentCartilage development involved in endochondral bone morphogenesisProtein localizationBrain development 2.60.40.10 89 14 79 3.36 4.23
1nctA00 79.19 Structural constituent of muscleCalcium ion bindingSarcomere organizationTelethonin bindingActin filament binding 2.60.40.10 98 14 80 3.50 4.34
2c5dC01 79.00 Integral to plasma membraneTransmembrane receptor protein tyrosine kinase activityHomo sapiensTyrosine-protein kinase receptor UFOSignal transduction 2.60.40.10 104 12 84 3.50 4.14
1t0pB00 78.86 Integral to plasma membraneIntercellular adhesion molecule 3Homo sapiensIntercellular adhesion molecule 3Cell adhesion molecules (CAMs) 2.60.40.10 86 4 82 3.74 4.53
1iamA02 78.84 Leukocyte migrationAdhesion to symbiontHeterophilic cell-cell adhesionRegulation of leukocyte mediated cytotoxicityT cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell 2.60.40.10 102 16 85 3.65 4.28
1mfaH01 78.68 2.60.40.10 97 9 73 3.58 4.89
3cafA01 78.67 Cell surfacePathways in cancerNucleusPositive regulation of cell proliferationFibroblast growth factor binding 2.60.40.10 96 10 79 3.88 4.89
2gy5A01 78.58 Cell surfaceMicrovillusIntegral to plasma membraneTransmembrane receptor protein tyrosine kinase signaling pathwaySignal transduction 2.60.40.10 99 9 81 3.92 4.79
1witA00 78.43 Caenorhabditis elegansProtein ZK617.1b, partially confirmed by transcript evidenceLocomotionReproduction 2.60.40.10 93 11 83 3.87 4.63
2q8bH01 78.41 2.60.40.10 112 7 70 3.38 4.79
2nqcA00 78.31 Plasma membraneFilamin-CHomo sapiens 2.60.40.10 97 9 86 4.30 4.97
1ogaD02 78.30 Homo sapiensT-cell receptor alpha chain C region 2.60.40.10 90 10 81 3.77 4.63
1ex0A04 78.21 Protein-glutamine gamma-glutamyltransferase activityHomo sapiensCoagulation factor XIII A chainBlood coagulation 2.60.40.10 95 8 86 3.99 4.61
1cs6A02 78.21 Cell adhesion molecule bindingContactin 2Neuron cell-cell adhesionGallus gallusContactin-2 2.60.40.10 89 14 77 3.38 4.37
1vjjA04 78.11 Calcium ion bindingHair follicle morphogenesisGTP bindingExtrinsic to internal side of plasma membraneTransglutaminase 3 [EC:2.3.2.13] 2.60.40.10 97 5 89 4.22 4.71
1f97A01 78.04 Mus musculusEpithelial cell differentiationJunctional adhesion molecule ACell adhesionTight junction 2.60.40.10 102 15 76 3.62 4.73
1pewA00 78.01 Ig lambda chain V-VI region SUTHomo sapiens 2.60.40.10 108 11 76 3.67 4.78
2ialA01 77.96 Homo sapiensT-cell receptor alpha chain C region 2.60.40.10 108 15 75 3.51 4.62
1cs6A03 77.92 Cell adhesion molecule bindingContactin 2Neuron cell-cell adhesionGallus gallusContactin-2 2.60.40.10 98 13 78 3.23 4.11
1rhfA01 77.91 Integral to plasma membraneTyrosine-protein kinase receptor TYRO3Cell adhesionTYRO3 protein tyrosine kinase 3 [EC:2.7.10.1]Signal transduction 2.60.40.10 89 11 81 4.01 4.92
1g0dA04 77.71 Protein-glutamine gamma-glutamyltransferase 2Pagrus major 2.60.40.10 97 7 90 4.15 4.57
2v44A02 77.70 Prion diseasesNeural cell adhesion moleculePlasma membraneNeuron cell-cell adhesionNeural cell adhesion molecule 2 2.60.40.10 93 8 81 3.47 4.26
3b4nA01 77.68 Erwinia chrysanthemiEndo-pectate lyase 2.60.40.10 88 3 75 3.19 4.24
2cqvA00 77.63 Myosin light chain kinase activityProtein phosphorylationHomo sapiensMyosin light chain kinase, smooth muscle 2.60.40.10 114 14 72 3.15 4.33
1mjuH01 77.63 2.60.40.10 115 8 69 3.29 4.73
1kv3A03 77.58 Huntington's diseaseProtein-glutamine gamma-glutamyltransferase 2Homo sapiensTransglutaminase 2 [EC:2.3.2.13] 2.60.40.10 117 5 74 3.68 4.95
2vxtH01 77.56 2.60.40.10 113 8 68 3.35 4.92
3hn3A02 77.54 Beta-glucuronidaseGlycosaminoglycan degradationGlycosaminoglycan catabolic processMetabolic pathwaysStarch and sucrose metabolism 2.60.40.320 103 6 78 3.29 4.18
1bihA04 77.51 Hyalophora cecropiaHemolin 2.60.40.10 88 6 82 3.88 4.70
1ogaD01 77.47 Homo sapiensT-cell receptor alpha chain C region 2.60.40.10 109 10 74 3.64 4.90
1fnfA01 77.23 FibronectinER-Golgi intermediate compartmentPeptide cross-linkingFibrinogen complexSubstrate adhesion-dependent cell spreading 2.60.40.10 94 9 78 3.60 4.59
1ej6A05 77.23 Mammalian orthoreovirus 3 DearingOuter capsid protein lambda-2 2.60.40.10 95 4 80 3.86 4.80
1xauA00 77.19 Integral to plasma membraneReceptor activityNegative regulation of B cell proliferationProtein bindingMus musculus 2.60.40.10 104 11 82 4.05 4.90
2gysB04 76.96 Jak-STAT signaling pathwayCytokine receptor common subunit betaApoptosisCytokine-cytokine receptor interactionGranulocyte macrophage colony-stimulating factor receptor complex 2.60.40.10 99 8 76 3.82 4.98
1cs6A04 76.95 Cell adhesion molecule bindingContactin 2Neuron cell-cell adhesionGallus gallusContactin-2 2.60.40.10 90 11 81 4.04 4.96
1jz7A02 76.90 Galactose metabolismSphingolipid metabolismOther glycan degradationMetabolic pathwaysLactose catabolic process 2.60.40.320 114 12 78 3.74 4.74
1bihA03 76.66 Hyalophora cecropiaHemolin 2.60.40.10 100 5 81 3.54 4.37
1vjjA03 76.45 Calcium ion bindingHair follicle morphogenesisGTP bindingExtrinsic to internal side of plasma membraneTransglutaminase 3 [EC:2.3.2.13] 2.60.40.10 115 10 73 3.61 4.88
1l6zA02 76.39 Mus musculusCarcinoembryonic antigen-related cell adhesion molecule 1 2.60.40.10 96 13 81 3.85 4.73
3bfoA00 76.31 T cell receptor signaling pathwayPositive regulation of T cell cytokine productionActivation of NF-kappaB-inducing kinase activityPositive regulation of interleukin-2 productionNucleus 2.60.40.10 85 12 78 3.88 4.95
2q0zX03 76.14 ATP-dependent helicase activityPre-mRNA-splicing helicase BRR2 [EC:3.6.1.-]Protein bindingU5 small nuclear ribonucleoprotein 200 kDa helicaseU5 snRNP 2.60.40.150 113 5 74 3.63 4.88
1fyhB02 75.92 Jak-STAT signaling pathwayInterferon gamma receptor 1Integral to plasma membraneChagas diseaseInterferon-gamma receptor activity 2.60.40.10 103 9 69 3.43 4.91
2r39A00 75.90 Vibrio parahaemolyticusFixG-related protein 2.60.40.10 107 7 87 4.23 4.81
1olzA03 75.85 Anti-apoptosisReceptor bindingSemaphorin-4DReceptor activityCell adhesion 2.60.40.10 89 13 73 3.42 4.67
1f2qA02 75.81 High affinity immunoglobulin epsilon receptor subunit alphaIntegral to plasma membraneHomo sapiensFc receptor, IgE, high affinity I, alpha polypeptideAsthma 2.60.40.10 90 7 77 3.82 4.94
1bihA01 75.67 Hyalophora cecropiaHemolin 2.60.40.10 97 12 85 4.22 4.93
2ny1B02 75.56 Zinc ion bindingMaintenance of protein location in cellT-cell surface glycoprotein CD4Signal transductionT cell receptor signaling pathway 2.60.40.10 75 17 74 3.67 4.94
1lp9E01 75.44 2.60.40.10 113 14 72 3.41 4.70
2jllA04 75.36 Prion diseasesNeural cell adhesion moleculePlasma membraneNeuron cell-cell adhesionNeural cell adhesion molecule 2 2.60.40.10 91 7 79 3.95 4.98
2nw2A01 75.33 TRA@ proteinHomo sapiens 2.60.40.10 103 4 76 3.69 4.81
1neuA00 75.26 Rattus norvegicusMyelin protein P0 2.60.40.10 115 4 71 3.12 4.38
2gysA03 75.15 Jak-STAT signaling pathwayGranulocyte macrophage colony-stimulating factor receptor complexCytokine receptor common subunit betaCytokine receptor common subunit betaApoptosis 2.60.40.10 86 8 76 3.76 4.93
1b4rA00 75.14 Integral to plasma membranePolycystin-1Homophilic cell adhesionHomo sapiensProtein binding 2.60.40.670 80 5 75 3.57 4.74
2qsvA02 74.69 Porphyromonas gingivalisPutative uncharacterized protein 2.60.40.360 104 8 87 3.87 4.42
1cidA01 73.68 Rattus norvegicusT-cell surface glycoprotein CD4Hematopoietic cell lineageT cell receptor signaling pathwayAntigen processing and presentation 2.60.40.10 106 4 71 3.51 4.90
1bihA02 72.78 Hyalophora cecropiaHemolin 2.60.40.10 106 8 72 3.58 4.93
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Displaying entries 1 to 109 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1q9rB02
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETV
TCNVAHPASSTKVDKKIVP
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1q9rB02
AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETV
TCNVAHPASSTKVDKKIVP
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:37

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:37

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 17:35

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"