CATH Domain: 1q1uA00 XML data for domain: 1q1uA00

Molscript image for 1q1uA00
1q1uA00
PDB coordinates for domain 1q1uA00

PDB 1q1u, Chain A, Domain 0

CATH CodeLevel DescriptionLinks
2 Mainly Beta
2.80 Trefoil
2.80.10 Trefoil (Acidic Fibroblast Growth Factor, subunit A)
2.80.10.50 Gene3D
2.80.10.50.11
2.80.10.50.11.1
2.80.10.50.11.1.1
2.80.10.50.11.1.1.1
2.80.10.50.11.1.1.1.1

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Segment boundaries for domain 1q1uA00

Chopping figure for domain 1q1uA00
DomainStart PDB ResidueStop PDB Residue
1q1uA00 6 143

Structural Neighbourhood (20 entries)

There are 20 matching structural neighberhood comparisons for CATH ID 2.80.10.50.11.1.1.1.1 (SIMAX score < 5)

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Displaying entries 1 to 20 (page 1 of 1)
Match Depth Match SSAP score Match Keywords Match Superfamily Length Sequence Id Overlap RMSD SIMAX
1ihkA00 90.79 Pathways in cancerMelanomaMAPK signaling pathwayRegulation of actin cytoskeletonGlia-activating factor 2.80.10.50 157 35 87 2.30 2.62
2fdbN00 89.60 Type 2 fibroblast growth factor receptor bindingMesonephros developmentPositive regulation of cell proliferationType 1 fibroblast growth factor receptor bindingExtracellular space 2.80.10.50 148 19 87 1.57 1.79
1upsA02 86.16 Clostridium perfringensGlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase 2.80.10.50 133 10 91 2.31 2.53
1dfcA03 86.15 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 13 87 2.27 2.59
1n4kA01 84.99 MicrosomeVoluntary musculoskeletal movementNucleolusPhosphoinositide bindingSarcoplasmic reticulum 2.80.10.50 141 15 82 2.11 2.56
1dfcA02 84.28 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 123 8 86 2.44 2.83
1w3fA01 84.03 Laetiporus sulphureusHemolytic lectin LSLa 2.80.10.50 147 11 87 3.18 3.65
1jlxA02 83.95 Amaranthus caudatusAgglutinin 2.80.10.50 140 6 89 3.00 3.36
1m2tB02 83.21 Beta-galactoside-specific lectin 1Viscum album 2.80.10.50 124 7 82 1.98 2.40
1vclA02 82.92 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 134 10 88 2.33 2.64
1dfcA01 82.83 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 122 17 84 2.20 2.59
1dqgA00 82.60 Mus musculusMacrophage mannose receptor 1Mannose bindingCell surfaceTransmembrane receptor activity 2.80.10.50 134 5 85 3.38 3.95
1md6A00 82.44 Mus musculusInterleukin-1 family member 5Interleukin 1 family, member 5 (delta) 2.80.10.50 154 13 82 2.81 3.41
1wd3A02 82.28 Alpha-L-arabinofuranosidase BAspergillus awamori 2.80.10.50 162 10 79 3.46 4.35
1jlxA01 81.79 Amaranthus caudatusAgglutinin 2.80.10.50 159 11 81 3.22 3.94
1t9fA00 81.62 Caenorhabditis elegansPutative uncharacterized protein 2.80.10.50 178 6 71 3.43 4.81
1vclA01 80.67 Cucumaria echinataHemolytic lectin CEL-III 2.80.10.50 149 7 83 2.66 3.17
1sr4A00 80.12 Haemophilus ducreyiCytolethal distending toxin subunit ACytolethal distending toxin subunit A 2.80.10.50 167 9 76 3.66 4.81
1dfcA04 80.07 FascinActin cytoskeletonActin filament bundle assemblyHomo sapiensCell proliferation 2.80.10.50 107 14 76 2.23 2.93
1hcdA00 79.75 Membrane fractionPlasma membraneActin filament bindingHisactophilin-1Cytosol 2.80.10.50 118 14 84 3.03 3.57
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Displaying entries 1 to 20 (page 1 of 1)


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Domain ATOM Sequence 

>pdb|1q1uA00
PQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKF
KESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIEV
BLAST against CATH

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Domain COMBS Sequence 

>pdb|1q1uA00
MESKEPQLKGIVTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFT
PECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKPIEVA
BLAST against CATH

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Domain History Events (3)

Set cath from cathlist by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Flow stage update by auto on 05 Mar 2006 18:48

This domain was assigned by cathlist2DB and was parsed from the cath list "/usr/local/cvs/source/lists/CathList"

Insertion by auto on 05 Mar 2006 15:10

PDB chopped based on information from the domall file "/usr/local/cvs/source/lists/CathDomall"